Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01047 ATGACGAGTGTGATTCTCAGAAGATCCTCTTCCGTAATCTCGCGCCGCTTCTTCGCCGCTCTCGCCTCCGTCGAGCCGCTTCCTCGCAGGTTCCCCGCCGACAGGCACGGTGTATCCGGCAACGGAGCCCGGACCTTTCACGCGAATCCCGGACCGTTGAATTTCCGAGCTTCGCTGGTTCCTCGAGCGGCGCAGTTCGCCATCGAGCGCGATTACTCCAACTACGAGGAAGTTAGCAACGCGAACAGCGACGAAGGACTCGAGATCGCGAAGCTCGGGATCGCTCCGGAGATCGTGGATGCTCTGGCCAGGAAAGGGATCGCGAAGCTCTTTCCCATTCAGAGAGCTGTGCTAGAACCTGCGATGCAAGGACGTGATATGATAGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGGATCACTCAGTTTAATGCTAAGCATGGACAAGGAAGAAATCCTTTGGCTTTGGTTTTGGCTCCAACTAGAGAACTTGCGCGGCAGGTTGAGAAGGAATTCAATGAGGCTGCACCTAACTTGGCCACAATCTGTCTTTATGGGGGTATGCCCATCCAGCAACAAATGAGGCAGCTTAATTATGGCGTAGATATTGCAGTAGGCACGCCTGGTCGAATTATTGATCTTCTCAATAGGGGGGCACTGAATTTAAAGGATGTCAAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCTGTGGAGAAGATCCTGGAAGGGTTGTCTCCAAATCGTCAGACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGAATATTACCCGCAATTACCTGAACAACCCCTTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCTGATGGAATTTCGTTGTACTCTATTGTGTCTGATTCGTACACTAAAGCAGGAATTCTTGCACCTCTGATAACAGAACATGCGAATGGAGGAAAGTGTATTGTTTTCACTCAAACGAAACGTGATGCTGATCGGTTATCATATGTCATGGCAAAAAGCCTTAGATGTGAGGCCTTGCATGGAGATATTTCACAAACTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAATAACAATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATTCCCAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCATCAGAGATATTTGTTCATCGATCTGGACGAACTGGCCGTGCTGGGAAGAAAGGAAGTGCCATTCTTTTTTTCACACAAGACCAATTCAGGGCCGTGCAGACTATTGAGCGTGATGTTGGATGCAAATTTACAGAGCTACCAAAGATTGATGCTCCAAGTGGATCAGCAGAGATGTTTAGTGGCATGGCTGGTGGTCGATTTGGCTCTATGAGGGATCGTCAATCTGGAGGTACAGGTTTTGGTCGCAGTCCTGGATTTGGTCGTTCTGGGAGTTACGGTAACTCTGGATTTGGCCAATCTAGTTATGATGGCTTTGGTTCTGGTCAAGCTCCTCAATTTGGTGGAAATTCTCGCCCCGGTGGAAATTCTCGGCCCAgtggttttggtagttcaggtcaatctggtggttttggtagttcaggtcaatctggtggttttggaaattttgggtcagAAAGTCAAACCAAAGCAGCACCTTTGGTAATTCACATGGTAGTGGTTTCAGTGCTTTTGGGAATGACCCAAATAATGACAGTTACAATAGATGAAAGCCGTTTTAACTTCAACTTGGCACTTTGTGATGGAAAAGGTTACGGCATAAGAATAATACATTCTATTCTTTGGGGCATTATTTTTTATTGGGATAAATCTTTAGCTCAAACTTAA 1899 0.4413 MTSVILRRSSSVISRRFFAALASVEPLPRRFPADRHGVSGNGARTFHANPGPLNFRASLVPRAAQFAIERDYSNYEEVSNANSDEGLEIAKLGIAPEIVDALARKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRITQFNAKHGQGRNPLALVLAPTRELARQVEKEFNEAAPNLATICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLNRGALNLKDVKFVVLDEADQMLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAKSLRCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGSAILFFTQDQFRAVQTIERDVGCKFTELPKIDAPSGSAEMFSGMAGGRFGSMRDRQSGGTGFGRSPGFGRSGSYGNSGFGQSSYDGFGSGQAPQFGGNSRPGGNSRPSGFGSSGQSGGFGSSGQSGGFGNFGSESQTKAAPLVIHMVVVSVLLGMTQIMTVTIDESRFNFNLALCDGKGYGIRIIHSILWGIIFYWDKSLAQT 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01047 632 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 3 557 - -
Gma18g01047 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 447 IPR027417 -
Gma18g01047 632 CDD SF2_C_DEAD 306 435 - -
Gma18g01047 632 Gene3D - 313 470 IPR027417 -
Gma18g01047 632 Pfam Helicase conserved C-terminal domain 321 426 IPR001650 -
Gma18g01047 632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 465 IPR001650 -
Gma18g01047 632 MobiDBLite consensus disorder prediction 475 504 - -
Gma18g01047 632 SMART ultradead3 106 309 IPR014001 -
Gma18g01047 632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 292 IPR014001 -
Gma18g01047 632 Gene3D - 88 296 IPR027417 -
Gma18g01047 632 PANTHER RNA HELICASE 3 557 - -
Gma18g01047 632 Pfam DEAD/DEAH box helicase 111 280 IPR011545 GO:0003676|GO:0005524
Gma18g01047 632 MobiDBLite consensus disorder prediction 519 559 - -
Gma18g01047 632 CDD DEADc 98 293 - -
Gma18g01047 632 SMART helicmild6 346 426 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01047 Gma-Chr18 14159480 14166806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01047 92 458 Eukaryotic Initiation Factors Gene Family AT3G19760 33.154 5.03e-66 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01047 - - gmx:100802553 1046.96