Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01039 ATGGCTTCTTCACTTGGTCGAAAAAGAACCCACGCTCCCAAAGGATCCTCCGCCCTTAACGACGACGTTTCCTGCGAGGTATGCAGCGGTGGCCACTCCCCTTCCAAGCTTATTCTCTGCGACAAATGCGACCGTGGTTACCACCTCTTCTGCCTCCGTCCAATTCTTCCCTATGTCCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCCAAGTCTTTCCCCCTTGTCCAGACCAAAATCATCGACTTCTTTCGAATCCAACGCTCCCCCGAGGCATTATCAAATCAAGACACGCGGAGGAAGCGAAAGCAGGGTGGGGGCTTGGTGAGCTATGCATCTAGAGTTGTAGACCACATATGCAGCATCGGAACTAAAAGGATTGGAGTTGGAAAAGCTCGTATCTGTATCAAGCAATTGAGGACACCCTTAAAGGAGTAA 450 0.5089 MASSLGRKRTHAPKGSSALNDDVSCEVCSGGHSPSKLILCDKCDRGYHLFCLRPILPYVPKGSWFCPSCSNHKPKSFPLVQTKIIDFFRIQRSPEALSNQDTRRKRKQGGGLVSYASRVVDHICSIGTKRIGVGKARICIKQLRTPLKE 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01039 149 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Gma18g01039 149 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Gma18g01039 149 PANTHER HISTONE ACETYLTRANSFERASE 14 114 - -
Gma18g01039 149 SMART PHD_3 24 70 IPR001965 -
Gma18g01039 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 85 IPR013083 -
Gma18g01039 149 Pfam PHD-finger 25 71 IPR019787 -
Gma18g01039 149 CDD PHD_RSF1 25 69 - -
Gma18g01039 149 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 14 114 - -
Gma18g01039 149 SUPERFAMILY FYVE/PHD zinc finger 17 76 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01039 Gma-Chr18 13976938 13978045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01039 21 130 C2H2 Transcription Factor Family AT3G01460 28.182 9.30e-12 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma18g01039 PHD 1.9e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01039 K24406 - gmx:102669791 242.662