Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00989 ATGGTTTTGAGGGTTTCTCTCATTCTAGTTCTCCTTGTGTTGCACTGTTCCTGCACTGTGCAATCCATTTTTGGGCATCACAATCACAATGATCTCAACAAGAATGGATCTTCTCTTGCTGCAGTCAAGTTTCCTGATCATGCACACTTCAATGCTGTTTCTTCTTCCACAGAAACTGGGTGTAGCTTCTCCAAGTCAGAGAAATTTGAGCCTTCGGTAGCAACCATGACATCAAATGGTGACACGGATGGTGAAGAGGGAGAGGCTTTTGTGGCAGCAAAACAGCACAAGCAATCTGTGAAACTCAATTTGAGACACCACTCAGTGAGCAAAGATTCTGAGCCTAAAAGGTCTGTGGCTGATTCTACAGTGAGAGACTTGAAGAGAATTCAGACCCTTCACAGAAGGGTCATAGAGAAGAAGAACCAAAACACAATTTCAAGGCTGGAGAAAGCACCGGAGCAATCAAAGAAGTCCTATAAGCTGGCGGCAGCGGCGGCTGCTCCGGCTGCCCCGCCGGAGTATTTCTCCGGTCAGCTTGTGGCAACCTTGGAGTCAGGGGTCAGTCTTGGCTCTGGTGAGTACTTCATGGATGTGTTTGTTGGCACACCCCCTAAGCATTTTTCTCTAATACTTGATACTGGTAGTGACCTTAATTGGATTCAATGTGTTCCTTGTTATGCTTGTTTTGAGCAAAATGGACCATATTATGATCCTAAGGATTCTAGTTCTTTTAAGAACATAACTTGCCATGATCCAAGGTGCCAATTGGTGTCATCCCCAGACCCTCCTCAGCCTTGCAAAGGTGAGACTCAAAGCTGTCCATATTTCTATTGGTATGGAGATAGTTCCAACACAACTGGGGATTTTGCACTTGAAACTTTCACAGTGAATCTCACCACACCTGAGGGAAAGCCTGAGCTCAAGATTGTTGAGAATGTTATGTTTGGTTGTGGTCATTGGAATAGAGGACTTTTTCATGGTGCTGCTGGATTGCTAGGGTTGGGGAGAGGGCCATTGTCATTTGCTACTCAGCTGCAATCTCTCTATGGTCATTCCTTTTCCTATTGCCTTGTGGATAGGAACAGCAATTCTAGTGTTAGTAGCAAGTTGATATTTGGTGAGGACAAGGAGCTTCTCAGCCACCCCAATTTGAATTTCACTTCTTTTGTTGGTGGCAAAGAGAACCCTGTTGATACATTTTACTATGTCCTGATAAAGTCCATCATGGTTGGTGGTGAGGTGCTGAAGATTCCAGAGGAGACTTGGCATTTGTCAGCACAAGGTGGAGGGGGAACAATCATTGATTCTGGCACCACTTTGACTTACTTTGCTGAACCTGCTTATGAGATTATCAAGGAGGCATTCATGAGGAAAATCAAAGGTTTTCCACTTGTTGAAACCTTTCCCCCTCTAAAGCCATGCTACAATGTGTCTGGAGTTGAGAAAATGGAGTTACCTGAATTTGCAATCTTGTTTGCTGATGGAGCTATGTGGGATTTCCCTGTGGAGAATTACTTCATCCAGATTGAACCTGAAGATGTTGTTTGCTTGGCTATTTTGGGGACTCCTAGGTCTGCACTTTCAATAATTGGAAACTATCAGCAGCAGAATTTCCACATCTTGTATGATTTGAAGAAATCAAGACTTGGATATGCACCAATGAAGTGTGCTGATgctattaatcttagtttgaagatcttggatagtggttggtttgacagaagcattttccaatcttttaagaatattgttaacatcaaatttTTTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGCATCCTAAGATCTACAGGATGAAGCTGTGGGCCACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTATTTCTTGAGAAAGCTAAAGAAGGTCAAGAAAAGCAATGGCCAAATGCTAGCCATCAATGAGATTTTTGAGAAAAATCCTACCAAGATCAAGAATTATGGAATTTGGCTGCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAATATCGCGATACTACTCTAAACGGCGCTGTTGAACACATGTACAACGAAATGGCATCTCGTCATAGAGTCAGGTCTCCATGCATCCAGATCATCAAAACTGCCACCATCCCAGCTAAACTTTGCAAAAGGGAGAGCACCAAGCAGTTCCACAACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAGGTTAGGCCCCCAACTAGGAAGCTCAAAACAACATACAAGGCAACCAAGCCCAACCTGTTTATGGGTGAGCGTCAGAAGGTTCAACCTCCTTCCTCCATATACGTTTATTCTATCTCACTTTCCTATTACAGTATCTTTACCTCAATGGCACCAAGTTCTGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATTGAGCATGTAAGAGTGGTCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAACTGGTTTCTCAGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGAAAGCAGAACTAGTTATTATAAAGGGAGCTGGTCGGGCTTTTTGTGCTGGAGGAGATTTGAGAGTCTTCTATGATGGAAGAAAAATAAAGGATGCCTGCCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATACTGATTGTGGTTTCTCATACTACCATTCTCGTTTACCTGGGTATTTAGGTGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGTTGGAGTGGCAACCCATTTTGTCCCTTATGAGAAAATTGTTGAGCTAGAGAAGCGCCTGATTAGCTTGAATTCTGGTGATGAGAATGCTGTAAGATCAGTAATTGAAGAATTTTCTTCAGAAGTTAAACTGGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATTAATGAGTGCTTCTCAAAGGATTCTTTAGAAGAAATTATAAAATCATTGGAAGCTGAAGCATACAAGGAAGGAAATGGATGGATAGATGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACACTACCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTAAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAGGATAATACTCCAAAGTGGGAACCTTCATCGCTTGACAAAGTAGAGGATGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAAATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCTCTTCCAAATTGA 3525 0.4142 MVLRVSLILVLLVLHCSCTVQSIFGHHNHNDLNKNGSSLAAVKFPDHAHFNAVSSSTETGCSFSKSEKFEPSVATMTSNGDTDGEEGEAFVAAKQHKQSVKLNLRHHSVSKDSEPKRSVADSTVRDLKRIQTLHRRVIEKKNQNTISRLEKAPEQSKKSYKLAAAAAAPAAPPEYFSGQLVATLESGVSLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCYACFEQNGPYYDPKDSSSFKNITCHDPRCQLVSSPDPPQPCKGETQSCPYFYWYGDSSNTTGDFALETFTVNLTTPEGKPELKIVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFATQLQSLYGHSFSYCLVDRNSNSSVSSKLIFGEDKELLSHPNLNFTSFVGGKENPVDTFYYVLIKSIMVGGEVLKIPEETWHLSAQGGGGTIIDSGTTLTYFAEPAYEIIKEAFMRKIKGFPLVETFPPLKPCYNVSGVEKMELPEFAILFADGAMWDFPVENYFIQIEPEDVVCLAILGTPRSALSIIGNYQQQNFHILYDLKKSRLGYAPMKCADAINLSLKILDSGWFDRSIFQSFKNIVNIKFFHQYQVVGRALPTETDVHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKATKPNLFMGERQKVQPPSSIYVYSISLSYYSIFTSMAPSSAVPDEQVVVGEEIEHVRVVTLNRPRQLNAISPELVSQLATYLEKWEKDEKAELVIIKGAGRAFCAGGDLRVFYDGRKIKDACLEVVYRFYWLCYHISTYKKTQVALVHGISMGGGAALMVPLKFSVVTEKTVFATPEASFGFHTDCGFSYYHSRLPGYLGEYLALTGGRLSGKEIVAVGVATHFVPYEKIVELEKRLISLNSGDENAVRSVIEEFSSEVKLDEESILNKQSIINECFSKDSLEEIIKSLEAEAYKEGNGWIDAVLKGMKRSSPTALKIALRSVREGRNQTLPECLKKEFRLTMNILRTTISKDMYEGIRALTIDKDNTPKWEPSSLDKVEDGKLDLIFQPFEKNLELQIPESEEYRWDGKYENSAYALPN 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00989 1174 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 7 559 - -
Gma18g00989 1174 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 591 712 IPR023573 GO:0003735|GO:0005840|GO:0006412
Gma18g00989 1174 Hamap 50S ribosomal protein L18Ae [rpl18a]. 590 653 IPR028877 -
Gma18g00989 1174 Pfam Xylanase inhibitor C-terminal 402 553 IPR032799 -
Gma18g00989 1174 ProSiteProfiles Peptidase family A1 domain profile. 195 553 IPR033121 -
Gma18g00989 1174 PRINTS Pepsin (A1) aspartic protease family signature 201 221 IPR001461 GO:0004190|GO:0006508
Gma18g00989 1174 PRINTS Pepsin (A1) aspartic protease family signature 433 444 IPR001461 GO:0004190|GO:0006508
Gma18g00989 1174 PRINTS Pepsin (A1) aspartic protease family signature 529 544 IPR001461 GO:0004190|GO:0006508
Gma18g00989 1174 Gene3D Acid Proteases 177 375 IPR021109 -
Gma18g00989 1174 SUPERFAMILY ClpP/crotonase 800 1125 IPR029045 -
Gma18g00989 1174 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 210 221 IPR001969 GO:0004190|GO:0006508
Gma18g00989 1174 CDD pepsin_A_like_plant 194 557 IPR034161 -
Gma18g00989 1174 Gene3D - 656 731 - -
Gma18g00989 1174 Gene3D - 797 1158 - -
Gma18g00989 1174 SUPERFAMILY Acid proteases 187 560 IPR021109 -
Gma18g00989 1174 Pfam Xylanase inhibitor N-terminal 195 374 IPR032861 -
Gma18g00989 1174 Gene3D Acid Proteases 376 564 IPR021109 -
Gma18g00989 1174 PANTHER ASPARTYL PROTEASES 7 559 IPR001461 GO:0004190|GO:0006508
Gma18g00989 1174 Pfam Enoyl-CoA hydratase/isomerase 810 1142 IPR045004 -
Gma18g00989 1174 SUPERFAMILY RplX-like 655 730 - -
Gma18g00989 1174 Gene3D - 581 655 - -
Gma18g00989 1174 CDD crotonase-like 805 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00989 Gma-Chr18 12635740 12694858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00989 590 762 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 93.064 1.69e-111 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00989 K22683 - zju:107416111 1119.76