Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00957 ATGGACAAGCATTCTGGGAATTCTTCATCAGCTCATGCTGCTGCAGGTCCATCTGGGATTTCCCCACATAATGTTCCAAAAAAAGCGGGAAGCAGTGCATGGGGAATACCACGTGCCAGTGATGTGTTCCATGACTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAATTAGATTTGACTGATTCGGAAAATTATGGTCAACCAGTTGATGATAACTTGCTAACATTAGATAAAGTTCACAAAGAGGATGAGGGACACGATCCTTTTGATGACTTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGAGGACCTTTTAGCTGGCATTATGGATGATTTTGACCTCAGTAAATTGCCCAGTCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTCAATGGAGGGGGATTTGAGATGGATTTTGAACCCCAAGAGAGCCTCAATATCAGTATGTCCAAGATAGGCATATCAGATGGAATTGCTTCAAATGGTATTGGTCAGTATGCAATCCCAAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGATATCAGAACTTTATACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGATATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCAAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGATCAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGACATCAAGTAGTTTCACCTGTGGCCAATTCTCCTCCTGGTAGCTGGGCACAATTTGGTAGTCCAGTTGAACAAAATCCATTAGCTTCTTTTAGCAAGTCCCCTGGTTTGGGCCCTGCCAGTCCCATTAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACAAGCAACAACCTCTACCAAGATTGCACCGATTGGCAAGGACCCTGGAAGGGCTGCAAATCAGATGTTTTCTAACTCTGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATATCCTTTCCTGAGCAAAATGTAAAGGCAAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAGTTCTAGTGCATCAAGTATTGGAACACTGTCCGGTCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCTGAGCATTCAAACACTTCTGCCTGGTCTTCATCTTCGGTGGGGCTTCCATTTACATCTAGTGTCCAAAGGCAGGGTTTCCCATATACTAGTAATCACAGTCCTTTTCTTGGCTCCCACTCTCATCATCATGTTGGATCTGCTCCATCTGGCCTTCCGCTTGATAGGCATTTTAGCTACTTCCCTGAGTCACCTGAAGCTTCTCTCATGAGCCCGGTTGCATTTGGGAATTTAAATCACGGTGATGGGAATTTTATGATGAACAACATTAGTGCTCGTGCATCTGTAGGAGCCGGTGTTGGTCTTTCTGGAAATACCCCTGAAATTAGTTCACCCAATTTCAGAATGATGTCTCTGCCTAGGCATGGTTCCTTGTTCCATGGAAATAGTTTGTATTCTGGACCTGGAGCAACTAACATTGAGGGATTAGCTGAACGTGGACGAAGTAGACGACCTGAAAATGGTGGGAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCGTCTGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTATACGTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTACTTATGACTTCCTCTACTTGCCAATTGACTTCAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTACAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCGCTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATTTGCATTCGCCAACCAGATGGATCCTATTCAAGTGATTTGTTGGAGAGCCCAAAGGGCAATTTGGATCAGAAGCTAGAGAAAGATTAA 2574 0.4246 MDKHSGNSSSAHAAAGPSGISPHNVPKKAGSSAWGIPRASDVFHDSSDVSLFSSSLPVLPHEKLDLTDSENYGQPVDDNLLTLDKVHKEDEGHDPFDDFETNAIGNMLPDDEEDLLAGIMDDFDLSKLPSQLEDLDENDLFVNGGGFEMDFEPQESLNISMSKIGISDGIASNGIGQYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVVSPVANSPPGSWAQFGSPVEQNPLASFSKSPGLGPASPINTNHLSGLAAILSPQATTSTKIAPIGKDPGRAANQMFSNSGSTQGAAFQHSISFPEQNVKASPRPISTFGESSSSASSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGLPFTSSVQRQGFPYTSNHSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVAFGNLNHGDGNFMMNNISARASVGAGVGLSGNTPEISSPNFRMMSLPRHGSLFHGNSLYSGPGATNIEGLAERGRSRRPENGGNQIDSKKLYQLDLDKIVCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQEHFLSSNLNICIRQPDGSYSSDLLESPKGNLDQKLEKD 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00957 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Gma18g00957 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Gma18g00957 857 CDD RRM1_MEI2_like 198 274 IPR034453 -
Gma18g00957 857 Gene3D - 693 786 IPR012677 -
Gma18g00957 857 SMART rrm1_1 200 268 IPR000504 GO:0003723
Gma18g00957 857 SMART rrm1_1 699 775 IPR000504 GO:0003723
Gma18g00957 857 SMART rrm1_1 285 353 IPR000504 GO:0003723
Gma18g00957 857 Gene3D - 188 282 IPR012677 -
Gma18g00957 857 SUPERFAMILY RNA-binding domain, RBD 699 784 IPR035979 GO:0003676
Gma18g00957 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Gma18g00957 857 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Gma18g00957 857 Pfam RNA recognition motif 2 697 793 IPR007201 -
Gma18g00957 857 MobiDBLite consensus disorder prediction 1 33 - -
Gma18g00957 857 PANTHER RNA RECOGNITION MOTIF-CONTAINING 8 853 - -
Gma18g00957 857 CDD RRM3_MEI2_like 700 785 IPR034454 -
Gma18g00957 857 CDD RRM2_MEI2_like 283 353 - -
Gma18g00957 857 Gene3D - 283 381 IPR012677 -
Gma18g00957 857 PANTHER PROTEIN MEI2-LIKE 2 8 853 - -
Gma18g00957 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00957 Gma-Chr18 11873955 11882703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00957 194 370 Eukaryotic Initiation Factors Gene Family AT3G16380 25.758 2.91e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00957 - - gmx:100812324 1696.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00957 18 11873955 11882703 Gma08g02909 08 45406653 45413736 GST