Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00919 ATGATTGACATAGGGAAGCATGTTTCAATTGCTGTAAATTTCACAGAATTAAAAAGTATTAGTTTTCCAGTAACACCACCTAGAAGACAACAAATTCATGTCCACAATGAGGATATGGGAAGGCTTAGAGAGATTTTCCTTCAACCACCTCAAAGAGCCACATTCCAAACAAACACACAAGCTCCCCCACTAGTAGAAATTTCCAAATCAACAGCTTTCAGCAAGCTTAAGAAAGTAGTCCATGACCCTCCACCAAAGAGGTATGCTAGGAGGGATGAAGATGGAAAGACTTGTGCTATTTGCTTGGAAGATTTTGAGCCCAGTGAGGAGGTCATGCTCACTCCTTGCAACCACATGTTTCATAAGGATTGCATTGTACCATGGCTAATAA 391 0.4066 MIDIGKHVSIAVNFTELKSISFPVTPPRRQQIHVHNEDMGRLREIFLQPPQRATFQTNTQAPPLVEISKSTAFSKLKKVVHDPPPKRYARRDEDGKTCAICLEDFEPSEEVMLTPCNHMFHKDCIVPWLI 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00919 130 ProSiteProfiles Zinc finger RING-type profile. 98 130 IPR001841 -
Gma18g00919 130 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 91 129 - -
Gma18g00919 130 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 15 91 - -
Gma18g00919 130 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 91 - -
Gma18g00919 130 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 91 129 - -
Gma18g00919 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 130 IPR013083 -
Gma18g00919 130 Pfam RING-like zinc finger 98 125 IPR001841 -
Gma18g00919 130 SUPERFAMILY RING/U-box 88 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00919 Gma-Chr18 10889500 10890264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00919 67 129 C3H Transcription Factor Family AT3G58720 48.571 2.42e-17 73.6