Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00901 ATGTCGCCTAGTTTCGTCTTCGACCCGCCTAGCGACGAAGAAATCGAACACTCTGAACACGAAGAAGAAGAAGAATCCGAAGAAGAACCAGAGTCAGGATCAGGAACAGGATCAGAATCAGAGTCAGAAGGAGAAGGAGAAGAAGAAGAAGGGCACGAAGAAGCGCGGGTTCCGAAGAAGAAGAAGAAGAAAACGCAGTCTCCATGGGACTTTGCTAAATACACGGAATCAGTGGCGGAGGAACACGCTCGCAGGAGCACAACCTCGGTCGACGAGAAAATCTCCAAAGCACTCAAACAACGTTCCACGCCGCTCGTTGCTGAGCTTGACCACAGCTCCGAGTCCGAACCTGATGAACAAGAAGATTATAGACCAGAGGAAGAAGATGAAGAAGAGGGTAATGATGGTGATAGCAAATCCTTTTTTGCTCCTTCTGATGGAACCTCTTTCCATGCCGATTCCTTCTTGCAGCTCAATCTGTCTCGCCCTTTGCTCCGGGCTTGTGAGGCCTTGGGGTATTCTAAACCAACGCCAATTCAGGCAGCTTGTATTCCATTGGCATTGAGTGGTCGTGATATATGTGGTAGTGCCATTACTGGGTCAGGGAAGACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCTGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCTTGTGTCCCAAAAAAAGGCAGACTATGTTGTTTTCAGCAACAATGACTGAGGAGGTTGACGAACTTATTAAACTTTCCCTGTCAAAGCCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGGCCAGCAACCTTGACTGAGGAAGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCTGCGCATAGATTGAAGATTATATTTGGATTAGCTGGCTCAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAGGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACAGATGTGGCTGCCCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGCGATCTTACTAGCTATGTTCATCGAGTTGGTCGTACTGCAAGAGCTGGAAGAGAAGGATATGCAGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATTGCAAAGAGGGCAGGTTCAAAGCTGAAAAGCCGCATTGTTGCCGAGCAATCTATACATAAGTGGTCTCATATAATTGAGCAAATGGAAGACCAAATTTCTGAAGTACTTCAAGAAGAGAGAGAAGAAAGAGTTCTAAGAAAAGCCGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTTCAAAAGCATCCAAGGCATCCATGGATAATAGCAAGAGTTCTGGGAAAGATGTAATTAGTGCTGAACAAGCTGAAAACCTTAGAATGAAGGAGAAGAGGAAGCGAGAGCGTGAGAAACATTTGCCTAGAAAGCAGCGTAGAAAGTTGGAAGCAGCTAGAGAGATGCTGGAGGATGAGGAGGAGGATGGTAAACAAGTAGAGGCTAAGGGGGGGAATAAAAAAGACAAGGGTGGAATGTCACTTGTTGATCTTGCATACCGACGGGCAAAAGCAGTAAAGGCTGTCAAGAAGGCATTAGATTCTGGCAAGATTGTGGAGAAGAATAAAAAGAAATCTAATAATAATTCCCGGAAAACTCCTTCAAGGACAGAAGAGATGCGGGAGCTATTCCAGACTGACATGAAGGATAAAAAGCCAAAAAGAGGTGTTGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2277 0.451 MSPSFVFDPPSDEEIEHSEHEEEEESEEEPESGSGTGSESESEGEGEEEEGHEEARVPKKKKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLVAELDHSSESEPDEQEDYRPEEEDEEEGNDGDSKSFFAPSDGTSFHADSFLQLNLSRPLLRACEALGYSKPTPIQAACIPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRTMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGSKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIHKWSHIIEQMEDQISEVLQEEREERVLRKAEMEATKAENMIAHREEIFSRPKRTWFVTEKEKKLASKASKASMDNSKSSGKDVISAEQAENLRMKEKRKREREKHLPRKQRRKLEAAREMLEDEEEDGKQVEAKGGNKKDKGGMSLVDLAYRRAKAVKAVKKALDSGKIVEKNKKKSNNNSRKTPSRTEEMRELFQTDMKDKKPKRGVGGGKKSKSSFKSKSRYKRK 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00901 758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 532 IPR001650 -
Gma18g00901 758 MobiDBLite consensus disorder prediction 639 672 - -
Gma18g00901 758 CDD DEADc_DDX27 164 359 - -
Gma18g00901 758 Coils Coil 642 665 - -
Gma18g00901 758 MobiDBLite consensus disorder prediction 600 616 - -
Gma18g00901 758 Gene3D - 360 548 IPR027417 -
Gma18g00901 758 MobiDBLite consensus disorder prediction 64 98 - -
Gma18g00901 758 Gene3D - 112 359 IPR027417 -
Gma18g00901 758 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Gma18g00901 758 MobiDBLite consensus disorder prediction 693 758 - -
Gma18g00901 758 Pfam Helicase conserved C-terminal domain 390 493 IPR001650 -
Gma18g00901 758 MobiDBLite consensus disorder prediction 15 34 - -
Gma18g00901 758 CDD SF2_C_DEAD 370 502 - -
Gma18g00901 758 Coils Coil 615 637 - -
Gma18g00901 758 SMART ultradead3 172 373 IPR014001 -
Gma18g00901 758 MobiDBLite consensus disorder prediction 1 143 - -
Gma18g00901 758 SMART helicmild6 408 493 IPR001650 -
Gma18g00901 758 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 304 312 IPR000629 -
Gma18g00901 758 MobiDBLite consensus disorder prediction 693 736 - -
Gma18g00901 758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 358 IPR014001 -
Gma18g00901 758 MobiDBLite consensus disorder prediction 595 676 - -
Gma18g00901 758 PANTHER BNAA01G17110D PROTEIN 309 737 - -
Gma18g00901 758 PANTHER BNAA01G17110D PROTEIN 59 284 - -
Gma18g00901 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 513 IPR027417 -
Gma18g00901 758 MobiDBLite consensus disorder prediction 114 135 - -
Gma18g00901 758 Coils Coil 531 571 - -
Gma18g00901 758 MobiDBLite consensus disorder prediction 737 758 - -
Gma18g00901 758 Pfam DEAD/DEAH box helicase 177 347 IPR011545 GO:0003676|GO:0005524
Gma18g00901 758 PANTHER RNA HELICASE 59 284 - -
Gma18g00901 758 PANTHER RNA HELICASE 309 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00901 Gma-Chr18 10599739 10608952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00901 108 510 Eukaryotic Initiation Factors Gene Family AT3G13920 32.266 1.62e-51 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00901 K13181 - gmx:100776684 1181.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00901 18 10599739 10608952 Gma08g02940 08 45843142 45852444 GST