Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00887 ATGGATGAAGAAGACTTATCCTCAATTTCTTCCAGGCACTACTATCCCTATCAACCCCACCATCCCTCCACTACCGGCATCGACACTGCCTTCCCCTTCGAGTtcatgaaggaaatcagagccaccgtgcagaaggtcatgaaggaaatcaaagccagaatggagaaggAGGCTGATTTGGACATTGGATTGGAAGGGTTTGAGTTCGTCAAAGGGTTTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCCTTGGACGAGAGTTTTCCACGGATGAGCAACGAGCATTTGATGCTTGAGAGGGAGGCGAGGAGGGCGGTGGTGGACCTGGTGGCGTGTTCTCCGGCGGAGTCCGTAGAGAGGTGGGGGGTTTAG 381 0.4357 MDEEDLSSISSRHYYPYQPHHPSTTGIDTAFPFEFMKEIRATVQKVMKEIKARMEKEADLDIGLEGFEFVKGFEECLRWFRVYFEALDESFPRMSNEHLMLEREARRAVVDLVACSPAESVERWGV 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00887 126 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 55 123 IPR005202 -
Gma18g00887 126 ProSiteProfiles GRAS family profile. 1 126 IPR005202 -
Gma18g00887 126 Pfam GRAS domain family 43 123 IPR005202 -
Gma18g00887 126 PANTHER PROTEIN SHORT-ROOT 55 123 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00887 Gma-Chr18 10358659 10359039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00887 39 123 GRAS Transcription Factor Family AT4G37650 56.180 8.10e-24 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma18g00887 GRAS 9e-10 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00887 - - gmx:100797072 131.339