Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00792 ATGGGTAGGGGCGGAACCGCCGCGGCGGCGGTGGAGATCGCCGAACCCGGTTCAAGGCCGGTTTTTTTCAAAGAACCGCGTTATAGGGGCGTCAGAAAAAGACCGTGGGGCCGGTTCGCCGCCGAAATCAGAGACCCTTTGAAGAAAGCCAGGGTTTGGCTCGGAACCTTCGACACCGCCGAGGAGGCGGCGCGTGCCTATGACACGGCGGCGAGAACCCTCCGGGGGCCGAAAGCAAAGACCAATTTCCCACTTTCTCCGCCGTTCTACCACCCCGATCCGTTTTCCGATCACCGGTACTTTGACGGCGCTGGCGCCGGCGAAGATTTCCAGGATCACCGGCGACCCACCTCCAGTGGTATGAGCAGCACCGTAGAATCCTTCAGCGGCCCACGCGCCGCCGTGCCGGCGAAGGCGCCGGTGATTGTCAACCGGAGATATCCCCGGACGCCGCCCGTCGTTCCCGAGGACTGCCGCAGCGACTGCGACTCGTCGTCATCCGTTGTGGACGACGGAGACGGCGACAACGTGGCGTCGTCGTTCCGGCGAGAACCGTTGCCGTTTGATCTAAACGTGTTACCGTTGGACGATGCTGACGTGGCAACCGATGATCTGTTCTGCACCGTTCTTTGCCTCTGA 639 0.6228 MGRGGTAAAAVEIAEPGSRPVFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARTLRGPKAKTNFPLSPPFYHPDPFSDHRYFDGAGAGEDFQDHRRPTSSGMSSTVESFSGPRAAVPAKAPVIVNRRYPRTPPVVPEDCRSDCDSSSSVVDDGDGDNVASSFRREPLPFDLNVLPLDDADVATDDLFCTVLCL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00792 212 MobiDBLite consensus disorder prediction 104 132 - -
Gma18g00792 212 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Gma18g00792 212 PANTHER ETHYLENE RESPONSE FACTOR 1 194 - -
Gma18g00792 212 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Gma18g00792 212 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Gma18g00792 212 MobiDBLite consensus disorder prediction 152 177 - -
Gma18g00792 212 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Gma18g00792 212 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Gma18g00792 212 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Gma18g00792 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 194 - -
Gma18g00792 212 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Gma18g00792 212 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00792 Gma-Chr18 8875506 8877082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00792 2 212 AP2-EREBP Transcription Factor Family AT1G50640 57.205 7.18e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma18g00792 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00792 K09286 - gmx:100782025 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00792 18 8875506 8877082 Gma18g00792 18 8875506 8877082 ECH
Gma18g00792 18 8875506 8877082 Gma08g02999 08 46536707 46537339 GST
Gma18g00792 18 8875506 8877082 Gma14g00178 14 1472397 1473809 PCT
Gma18g00792 18 8875506 8877082 Gma02g02761 02 53242850 53243518 PCT
Gma14g00178 14 1472397 1473809 Gma18g00792 18 8875506 8877082 PCT
Gma02g02761 02 53242850 53243518 Gma18g00792 18 8875506 8877082 PCT