Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00740 ATGGATATTTCGGAGTACACGAGGATTGTTTTTGATAAACTTCAAAGATTTGAGCCTGAGCATACTACAAAGATCATAGGGTATCTCCTTCTCCAAGACCATGGTGAGCAAGAGATGGTGAAGTTGGCTTCACTGCCAGACCATTTAATTCGTGGCGTGGCTTACAAGGCGAGAACTGAGCTTCAAAGGCTGGCTGCTAGATCAGCCATTCAGCCAATTTCACTTCCCATCAACTCTCAACAATGTTTAAACCATTTGTCAGTAATCTCCCCTACTTCGGTAATCACCCCTGGCACTCCTACTTCACCAGCAAGCTTCCAGGTTCAATCTCCCTATTGGGATCCTCAATCTGCTAGCAATACTAATGCAGAATTCATGGCACTGGGTTATTTGGATTCTATCTCAGAATTTCAAAAGCAGACCCCTTTGTTCAGTTTAGATAATCATATGGATACTATGAATTCCGGGACTGCTGGGATTGCTAATGATTACTATGGCTTAGATGCTTCATCAGTTAGTAATTTGGGTGGCAAAAATGGTAGAAGGTTTGAATTTCCAGTCAAGACCTGTCACTATTTCAACAAAGGTTTTTGTAAGCATGGAAATAGTTGTAGATATTATCATGAACATGGCGTCCCTGATATGTTCTCTCACATGTATGGAAATGATACTTTTAATGATGATCCGGTGATTTCACCTGGGTCACTAGCACAATTAGAGTCAGAAATTGTTGAACTCCTGAAACTAAAAAAAGGCGGTTCAATATCAATTGCTTCCCTTCCAATGGCATACTATGAGAGGTACAAAAAAGTGCTGCAAGCAGAAGGCTACCTGACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAACTTCTTGCACGGTTGAAAAATAGTATTCGGCTAATTGACAGCAGGCCTCATGGGCAGCATTCAGTTGTTCTGGCAGAAGATGCTCCAAAGTTCAACGGAAAGGTAGATTATGGTAAATACATCAGTGCATCACGACAAATATACCTGACATTTCCGGCTGACAGCACTTTTAGCGAGGGTGATGTTTCATACTACTTTAGCACTTTTGGGAAAGTTGAAGATGTAAGGATTCCGAGCCAAGAGAGAAGGATGTTTGGATTTGTGACATTAAATGATCCTGAAACTGTTAAAGTAATTTTGGATAAGGGAAATCCCCATTATGTTTGTGAATCTCGGGTTCTTGTGAAACCTTATAAGGAGAAGCCAAAATTTATGCCCAGGAAGCACTCAGATAGAATCGAGCACTCTGCTTATTATTCACCACACTATGTAGACATTGACACTGAACCCACCTCAATTCCAAGAAGTTTCAGGAACCCTCGATTTCTTAGGAGGCTGCTCATTGAAAAGCAAGAGGAGGCAGCCTTTGAATTTCAGAGACGACGATTTGCAGAGCTGCAAATGGCCCAAAAATCATTGTCCACATCACCCCATTTAGGCTTCAACACAGACGGGTTTAAAGTTTCAGATGAACATTTCAATGTCCAGTCTGCAGAATCTCACAGTCATGCACTGAATGACAAAGCAGGATATACAGATAACAATTGCACTGATGAGGACAGCAATCAAGGACTGAATCTCCCAGACAGCCCATTTGCATTTCCAGTAGATAGTGGATTTTGA 1662 0.4158 MDISEYTRIVFDKLQRFEPEHTTKIIGYLLLQDHGEQEMVKLASLPDHLIRGVAYKARTELQRLAARSAIQPISLPINSQQCLNHLSVISPTSVITPGTPTSPASFQVQSPYWDPQSASNTNAEFMALGYLDSISEFQKQTPLFSLDNHMDTMNSGTAGIANDYYGLDASSVSNLGGKNGRRFEFPVKTCHYFNKGFCKHGNSCRYYHEHGVPDMFSHMYGNDTFNDDPVISPGSLAQLESEIVELLKLKKGGSISIASLPMAYYERYKKVLQAEGYLTESQRHGKSGYSLTKLLARLKNSIRLIDSRPHGQHSVVLAEDAPKFNGKVDYGKYISASRQIYLTFPADSTFSEGDVSYYFSTFGKVEDVRIPSQERRMFGFVTLNDPETVKVILDKGNPHYVCESRVLVKPYKEKPKFMPRKHSDRIEHSAYYSPHYVDIDTEPTSIPRSFRNPRFLRRLLIEKQEEAAFEFQRRRFAELQMAQKSLSTSPHLGFNTDGFKVSDEHFNVQSAESHSHALNDKAGYTDNNCTDEDSNQGLNLPDSPFAFPVDSGF 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00740 553 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 552 - -
Gma18g00740 553 SUPERFAMILY RNA-binding domain, RBD 349 431 IPR035979 GO:0003676
Gma18g00740 553 Pfam OST-HTH/LOTUS domain 235 315 IPR025605 -
Gma18g00740 553 SMART rrm1_1 339 409 IPR000504 GO:0003723
Gma18g00740 553 MobiDBLite consensus disorder prediction 522 553 - -
Gma18g00740 553 Gene3D - 184 243 - -
Gma18g00740 553 Gene3D - 343 416 IPR012677 -
Gma18g00740 553 MobiDBLite consensus disorder prediction 522 541 - -
Gma18g00740 553 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 414 IPR000504 GO:0003723
Gma18g00740 553 ProSiteProfiles OST-type HTH domain profile. 235 319 IPR025605 -
Gma18g00740 553 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 552 - -
Gma18g00740 553 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00740 Gma-Chr18 7854339 7857345 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma18g00740 OST-HTH 6.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00740 - - gmx:100780955 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00740 18 7854339 7857345 Gma18g00740 18 7854339 7857345 ECH
Gma18g00740 18 7854339 7857345 Gma08g03039 08 46987166 46991711 GST
Gma18g00740 18 7854339 7857345 Gma02g02793 02 53524026 53528496 PCT
Gma02g02793 02 53524026 53528496 Gma18g00740 18 7854339 7857345 PCT