Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00712 ATGGAAAAGATGAAGAAAAGTGAGAACAGTAAGGTTGTATCTCAAAGCTTAAACCAAGACATTGAATTTGAAACTCCGAAGAAAACTGCACCGAACACTGAATCTCAGTTACCGAGGAGCTTCTTCTACGAACCGTGCTTAATTCCACACAGAAACACCGAGTCAAACTGCACTTCAACTTCACGTGGAACAAGAATCAAACCGTTTCGTGCTTCGATTATCCGTTTGTCGATGGCGGACTCGGACAACGACTCCGGCGGCGCGCACAACGCCGGGAAGGGGAGCGAGATGTCGCCGCGGGAGCAGGACCGGTTCCTGCCGATCGCGAACGTGAGCCGCATCATGAAGAAGGCGCTGCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAGAAGCGCAAGACGATCAACGGCGACGACCTGCTCTGGGCGATGACCACTCTCGGCTTCGAGGACTACGTCGAGCCTCTCAAGGGCTACCTCCAGCGCTTCCGAGAAATGGAAGGAGAGAAGACAGTGGCGGCGCGTGACAAGGACGCGCCTCCTCCTACCAATGCTACCAACAGTGCCTACGAGAGTCCTAGTTATGCTGCTGCTCCTGGTGGAATCATGATGCATCAGGGACACGTGTACGGTTCTGCCGGCTTCCATCAAGTGGCTGGTGGTGCTATAAAGGGTGGGCCTGTTTATCCCGGGCCTGGATCCAATGCCGGTAGGCCCAGTAAACATATATGGTGGAAAGATCTAGCTAAGATTGAGCATAAGGAAATATTGATCGCCACGCGAATGGTATGA 867 0.5433 MEKMKKSENSKVVSQSLNQDIEFETPKKTAPNTESQLPRSFFYEPCLIPHRNTESNCTSTSRGTRIKPFRASIIRLSMADSDNDSGGAHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKGYLQRFREMEGEKTVAARDKDAPPPTNATNSAYESPSYAAAPGGIMMHQGHVYGSAGFHQVAGGAIKGGPVYPGPGSNAGRPSKHIWWKDLAKIEHKEILIATRMV 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00712 288 PRINTS CCAAT-binding transcription factor subunit A signature 152 170 - -
Gma18g00712 288 PRINTS CCAAT-binding transcription factor subunit A signature 133 151 - -
Gma18g00712 288 PRINTS CCAAT-binding transcription factor subunit A signature 171 189 - -
Gma18g00712 288 MobiDBLite consensus disorder prediction 1 35 - -
Gma18g00712 288 ProSitePatterns NF-YB/HAP3 subunit signature. 136 152 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gma18g00712 288 MobiDBLite consensus disorder prediction 79 102 - -
Gma18g00712 288 MobiDBLite consensus disorder prediction 195 217 - -
Gma18g00712 288 Gene3D Histone, subunit A 93 222 IPR009072 GO:0046982
Gma18g00712 288 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 78 233 - -
Gma18g00712 288 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 78 233 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gma18g00712 288 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 105 169 IPR003958 -
Gma18g00712 288 SUPERFAMILY Histone-fold 102 205 IPR009072 GO:0046982
Gma18g00712 288 MobiDBLite consensus disorder prediction 10 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00712 Gma-Chr18 7406279 7410002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00712 78 235 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.069 1.36e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma18g00712 CBFD_NFYB_HMF 3.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00712 K08065 - gmx:100813580 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00712 18 7406279 7410002 Gma18g00712 18 7406279 7410002 ECH