Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00672 ATGGAGACTCCAGTTGAAGTGAAACCTACTCGAGTTGCATCTGGATTCTTAGATGACTTGTCTGAGACTTGCAAGATGGGTACTCCAAACGGAAGAGCAATGTGTAAGTCTGACGATGAAGTTCCTTTTGACTCTGAAATAAATTTTCACCTGTCAGAATCTATTCTGGTGGATGTACGTGGATCACATTCTGGAGAATCTCAGACTGCTCGTCATGAAACGTTGGCGGGTATTATTTACAAGAGCATACGAGTTGTAGTTTTTTCTAACAAACTCAACTTGCTTATGCCTTTTGGGCCTCTTGCAATTCTTGTGCAGAAGTTGACTGGCCATCTTGGTTGGGTCTTTGGTCTGAGTTTGTTGGGTATAGTGCCTCTGGCGGAGCGGTTAGGTTATGCTACTGAGCAGCTAGCATTTTACACCGGAGATACTGTTGGGGGTCTTCTAAATGCTACATTTGGAAATGCGACAGAATTGATCATCTCAATATATGCATTAAAAAGTGGAATGACACGAGTTGTCCAGCTCTCTTTGCTGGGTTCAATTTTGTCCAATATGTTACTGGTGCTTGGATGCGCATTCTTATGTGGTGGGATTGTTAATCACAAGAAGGAACAAGTGTTTAACAAGGCAGCTGCTTCCGTGAACTCAGGATTATTGCTGATGGCAGTCATGGGCATACTTTTTCCTGCTGTTCTACACTACACTCACACTGAGGTCCGTGTTGGGAAGTCAGAGTTGTCACTTTCAAGACTCAGCAGCTGCATTATGCTTGTGGCCTATGTTGCATACCTATTTTTTCAGTTAAAAAGTCAAAGAAGTCTCTATGTCTCTGTGAACGAGGATGAGAGTCAGAATGGAAACAACTCAAATGATGATGAATCCCCAGATATTTCTAAATGGGAAACACTAATCTGGCTTTCGGTTATGACTGCTTGGATATCAATCCTGTCAGAATATTTGGTTGGCGCTATGGAGGGAGCATCTATGGCATGGGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAGCCGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGATACCATTTTGTGTTGTTATTGGCTGGATAATAGGGCAACCTATGGACTTAAACTTTCAACTTTTTGAGACTGCAGCACTATTTCTTACTGTTATAGTCGTAGCCTTCATGTTACAGGAAGGAACTGCTAATTACTTCAAAGGGCTAATGCTTATTCTTTGCTATCTGATAGTGGCAGCCAGTTTTTATGTACATGTAGATTCCTCTCAATAA 1362 0.4148 METPVEVKPTRVASGFLDDLSETCKMGTPNGRAMCKSDDEVPFDSEINFHLSESILVDVRGSHSGESQTARHETLAGIIYKSIRVVVFSNKLNLLMPFGPLAILVQKLTGHLGWVFGLSLLGIVPLAERLGYATEQLAFYTGDTVGGLLNATFGNATELIISIYALKSGMTRVVQLSLLGSILSNMLLVLGCAFLCGGIVNHKKEQVFNKAAASVNSGLLLMAVMGILFPAVLHYTHTEVRVGKSELSLSRLSSCIMLVAYVAYLFFQLKSQRSLYVSVNEDESQNGNNSNDDESPDISKWETLIWLSVMTAWISILSEYLVGAMEGASMAWEIPVAFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVIPFCVVIGWIIGQPMDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGLMLILCYLIVAASFYVHVDSSQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00672 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 29 452 IPR004713 GO:0006812|GO:0008324|GO:0016021
Gma18g00672 453 TIGRFAM cax: calcium/proton exchanger 96 446 IPR004798 GO:0006816|GO:0015369
Gma18g00672 453 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 29 452 - -
Gma18g00672 453 TIGRFAM caca2: calcium/proton exchanger 82 445 - -
Gma18g00672 453 Gene3D - 290 447 IPR044880 -
Gma18g00672 453 Gene3D - 141 282 IPR044880 -
Gma18g00672 453 Pfam Sodium/calcium exchanger protein 305 444 IPR004837 GO:0016021|GO:0055085
Gma18g00672 453 Pfam Sodium/calcium exchanger protein 112 269 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00672 Gma-Chr18 6822587 6828802 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00672 60 453 Antiporters AT1G55730 73.604 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00672 K07300 - gmx:100775769 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00672 18 6822587 6828802 Gma18g00672 18 6822587 6828802 ECH
Gma18g00672 18 6822587 6828802 Gma08g03126 08 47963640 47968917 GST