Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00658 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGATCAGATCCTCATTCCTTTCAACCTGGCAGTGTTTATTCTGAGCCTTGGTGGCGTGGTATTGGGTACAATCCTGTGGCCCAGACAATGGCTGGGGCAAATGCATCCAATTCATCGTCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAAGGTCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCACAGCCTGCTGCTCCTAATGGAACAGGAAATTATGGGCAAGAACAGCAAGGGATGCAGCATACTGCATCATCTGCACCCTCCATGCGTGAAGAATGCCTTACTCAGACACCACAGCTGGAACTTGTCGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAACAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTGTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACTGGAGGACGATTTGCAAAGAAAACTGACGGTGAGGGCTCAAACCACTCAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTACATTCTGACTCTGCCGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCATCAAAAGTGCACAACAGGTTCAAAGCACCCTGTTACCAAAATGGCAGTGGCTCCTACCATAATCATAATGGATTGCAATCTTCAGTGTACCATTCATCCTCAGGTGAAAGACTGGAGGAAAGGGATTGTTCGGGTCAGCAACTGAACCACAATTGA 1017 0.4572 MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPVAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNGTGNYGQEQQGMQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNHSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARASKVHNRFKAPCYQNGSGSYHNHNGLQSSVYHSSSGERLEERDCSGQQLNHN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00658 338 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Gma18g00658 338 MobiDBLite consensus disorder prediction 1 20 - -
Gma18g00658 338 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Gma18g00658 338 Gene3D - 174 236 - -
Gma18g00658 338 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Gma18g00658 338 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Gma18g00658 338 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 335 IPR001289 GO:0003700|GO:0006355
Gma18g00658 338 MobiDBLite consensus disorder prediction 85 117 - -
Gma18g00658 338 MobiDBLite consensus disorder prediction 44 117 - -
Gma18g00658 338 MobiDBLite consensus disorder prediction 229 249 - -
Gma18g00658 338 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Gma18g00658 338 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 335 - -
Gma18g00658 338 MobiDBLite consensus disorder prediction 321 338 - -
Gma18g00658 338 MobiDBLite consensus disorder prediction 298 320 - -
Gma18g00658 338 MobiDBLite consensus disorder prediction 250 287 - -
Gma18g00658 338 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Gma18g00658 338 MobiDBLite consensus disorder prediction 207 338 - -
Gma18g00658 338 MobiDBLite consensus disorder prediction 209 228 - -
Gma18g00658 338 MobiDBLite consensus disorder prediction 44 74 - -
Gma18g00658 338 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00658 Gma-Chr18 6684646 6688182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00658 16 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.135 5.33e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma18g00658 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00658 K08064 - gmx:100808378 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00658 18 6684646 6688182 Gma18g00658 18 6684646 6688182 ECH
Gma18g00658 18 6684646 6688182 Gma08g03116 08 47868013 47871555 GST
Gma18g00658 18 6684646 6688182 Gma14g00095 14 794578 796711 PCT
Gma18g00658 18 6684646 6688182 Gma02g02842 02 53888936 53892862 PCT
Gma14g00095 14 794578 796711 Gma18g00658 18 6684646 6688182 PCT
Gma02g02842 02 53888936 53892862 Gma18g00658 18 6684646 6688182 PCT