Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00622 ATGGCATCCATTGCCACCTTCTTCAACAAGTTCCTCTACTTCTTTATCCTCTTAGTCCACCTCGGCTGCTTCATCTTCACCACCGCCGGGAAACAATCGCCGCCGTCAAAGAAACGCAAAACCTCACCTTTATCCCAACCCTCCTCCCCTTCCCACACCAAATTCAAAACCCACAAAGCCCTCTCCTCTTCTTGGCATTTCATCAAACATCTCTTCTCCACCAAGTCCTGCAAAACCCCAAACACCGCCACCACCCAATCCTCCCCTCAATCCACCGCCACCACCACTACCACCACCGCCTCCGCCGCCGCAGCAAGTTCTTTAATTTCCTTATCGCAACCCGACCCGGATAGGAATCAACCCGTTTCGTGCCCCGAATCCGGCATCTCTACCGACACCAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACTGCGTGCGGCGAGATTTTCCAGAAGCCCCACCTCTTAGAAGCCCATCAAACCCTCAAACACGCGGTTTCGGATCTACCCGGATCCGACCCGGGTCACAACATCGTCCAAATCATCTTCAAATCGGGTTGGCCCGAATCCAAGCCATTCCCAACCATAACCCGCATTCTCAAGATCCACAACAGCCCCAAGATCCTCTCCAAATTCGAAGAGTACCGCGAGGCCGTGAAGTCCAAGGCGGCGCGTCACGGCGCCCATACGCGCCGCCGCGACGAGCGCTGCATCGCCGACGGAAACGAGCTCATGCGCTTCCACTGCTCGACCTTTTTATGCGACTTGGGACACAACGGGGATTCCGCGATTTGTTCGCAGCAGTTTTGTAACATTTGCGGAATTATTAAGTCCGGGTTTTCCCCGAAACTCGACGGGATCGCCACGCTGTCCACTAGTTGGCGGGCACACGTGGCGATCCCCGAGGACATAGAGCGGGAGTTCCGCTTCATGAATGTGAAGCGGGCAATGCTTGTTTGTCGGGTGATTGCGGGTCGGGTCGGATCGGATTCGGATGAGGTGGAAAAAGAGGACGGAGGGTTTGATTCGGTGATGGCGAGTGGAGAGAGTGGGGTCTACACCCGCCTTGATGAGGAGGAGCTTTTGGTGTTTAATCCTAGGGCTGTGCTTCCTTGCTTTGTGATTGTGTATAGTGTGTGA 1149 0.55 MASIATFFNKFLYFFILLVHLGCFIFTTAGKQSPPSKKRKTSPLSQPSSPSHTKFKTHKALSSSWHFIKHLFSTKSCKTPNTATTQSSPQSTATTTTTTASAAAASSLISLSQPDPDRNQPVSCPESGISTDTNLFFPLRNDIFPCTACGEIFQKPHLLEAHQTLKHAVSDLPGSDPGHNIVQIIFKSGWPESKPFPTITRILKIHNSPKILSKFEEYREAVKSKAARHGAHTRRRDERCIADGNELMRFHCSTFLCDLGHNGDSAICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPEDIEREFRFMNVKRAMLVCRVIAGRVGSDSDEVEKEDGGFDSVMASGESGVYTRLDEEELLVFNPRAVLPCFVIVYSV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00622 382 ProSitePatterns Zinc finger C2H2 type domain signature. 146 167 IPR013087 -
Gma18g00622 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 168 IPR013087 -
Gma18g00622 382 PANTHER NUCLEIC ACID BINDING PROTEIN 3 381 - -
Gma18g00622 382 SUPERFAMILY ADP-ribosylation 171 381 - -
Gma18g00622 382 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 381 - -
Gma18g00622 382 Gene3D - 168 381 - -
Gma18g00622 382 MobiDBLite consensus disorder prediction 30 55 - -
Gma18g00622 382 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00622 Gma-Chr18 6129971 6131585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00622 65 382 C2H2 Transcription Factor Family AT2G29660 55.657 1.02e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma18g00622 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00622 - - gmx:100785244 731.48