Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00613 ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCATCACCTTACATGTACAATTCCAATTGGCTTCTTGATGATAACAGGACCAACAACACCAAATGGACCCCTGCAGAGAATAAGCTGTTTGAGAATGCTCTTGCCGTGTATGATAGGGACACTCCCGATCGGTGGCACAAGGTGGCCGAGATGATACCAGGAAAGACGGTTATGGATGTAGTGAAGCAGTACAAGGAATTGGAAGCAGATGTTTGTGACATAGAAGCAGGGTTGATCCCAATTCCGGGGTACAGTAGTGGTACCACCACAACCTCACCCTTCACCTTGGATTGGGTGAACACTAGTCCTGCTTATGATGATGGCTTCAAAGGAATCACTGCTAAGAGATCCTCCTCTGGAAGACCCCTTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACATAAgttgtttctactggggctgaagaagtatggcaaaggtgattggagaaacatatcgcgaaattatgtgatcactaggacgccaactcaagttgctagccatgctcagaagtacttcatcaggcaactatcaggaggcaaggacaagaggagggctagcatccatgacataacAACGGTTAATCTCACAGAAACCACCAGAACTTCTTCTGATGAAAGCAAGAGATCTGCTTCGCCACAAAATTCCGCAATGCTCTCACGCCACCAGCAGCTGAATTCTAATGCTGCCTCATCCGGATTGAATTTCCAGTGGAGCGATCAGCCAAATGCAGGGGTAGCTATGGCACTCAACCCTGCACATGAACAAGTCTTCATGTCCCCTTATGGCCTTAACTCATACGGGTTTAAGATGCAGGGCCAAAATCTGCACAGAAGTTCTCTTCATGAGTCTTCTTACTTAGGACCTCAGACACCAAACATGGTTTTCCAAATGCagccctcccaacactattcccatgcatga 966 0.3747 MKWEMEILPPASPYMYNSNWLLDDNRTNNTKWTPAENKLFENALAVYDRDTPDRWHKVAEMIPGKTVMDVVKQYKELEADVCDIEAGLIPIPGYSSGTTTTSPFTLDWVNTSPAYDDGFKGITAKRSSSGRPLEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSDESKRSASPQNSAMLSRHQQLNSNAASSGLNFQWSDQPNAGVAMALNPAHEQVFMSPYGLNSYGFKMQGQNLHRSSLHESSYLGPQTPNMVFQMQPSQHYSHA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00613 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 191 IPR017930 -
Gma18g00613 321 ProSiteProfiles SANT domain profile. 143 191 IPR017884 -
Gma18g00613 321 Gene3D - 141 191 - -
Gma18g00613 321 MobiDBLite consensus disorder prediction 211 235 - -
Gma18g00613 321 ProSiteProfiles Myb-like domain profile. 24 78 IPR001005 -
Gma18g00613 321 CDD SANT 142 187 IPR001005 -
Gma18g00613 321 SUPERFAMILY Homeodomain-like 136 190 IPR009057 -
Gma18g00613 321 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 295 IPR043363 -
Gma18g00613 321 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 295 - -
Gma18g00613 321 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 138 190 IPR006447 GO:0003677
Gma18g00613 321 CDD SANT 31 77 IPR001005 -
Gma18g00613 321 Pfam Myb-like DNA-binding domain 142 187 IPR001005 -
Gma18g00613 321 ProSiteProfiles Myb-like domain profile. 135 187 IPR001005 -
Gma18g00613 321 SUPERFAMILY Homeodomain-like 30 83 IPR009057 -
Gma18g00613 321 Gene3D - 24 91 - -
Gma18g00613 321 SMART sant 139 189 IPR001005 -
Gma18g00613 321 SMART sant 28 80 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00613 Gma-Chr18 6014645 6017075 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma18g00613 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00613 - - gmx:100784163 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00613 18 6014645 6017075 Gma18g00613 18 6014645 6017075 ECH
Gma18g00613 18 6014645 6017075 Gma18g00282 18 2354988 2357044 ECH
Gma18g00613 18 6014645 6017075 Gma11g02292 11 38282740 38285188 ECH
Gma03g00701 03 22248348 22251015 Gma18g00613 18 6014645 6017075 ECH
Gma01g01127 01 39907973 39909727 Gma18g00613 18 6014645 6017075 ECH
Gma18g01813 18 50365264 50368004 Gma18g00613 18 6014645 6017075 ECH
Gma07g01344 07 17814718 17816114 Gma18g00613 18 6014645 6017075 ECH
Gma18g00613 18 6014645 6017075 Gma11g01991 11 31755503 31757552 GST