Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00607 ATGGTCCTTTTACTCTCACTCGTGACTTCCAAAACTCACCATGCCCTATCTCTCCGCGAACGCTTCGCCGCCATCGTTTCCAACTTCACCACCTCTCTCTCCGCCGCTCCTTCCGACAGCCCTTGCCACCATGGGGCGAGAAGAAGAATGGTGATCAACTCTTCAACAGCCACGTTGACCGACGGCGACGAGAAGAAAAAATCCCCCCTGCTTTGTCATCATGATCACGATAATGAAACAAACAAGAGTGACCAGTCCTCGAAATTCTTTTGTGGTATATGTCTTGATGACAAACCAGTGTCTGATATGTTCAAAGTGGGTAAATGTGAGCACTCCTTTTGCACTCACGGCATATCCAAACACGTGGCCACTCAAATGCACCAAAACATTCTCGTGGTAATGTGTCCAAACCCAAAGTGTTCGATGGAATTGAAGCCTGAATATTTGCATGCCATTCTGCCTAGGGAAGTTCTTGTTAGATGGAAATGTGCGATGTTTGAGTCCTTGATTGTTGAGTCGGAGAAGACTTATTATTACTGCCCCTTTAAGGATTGTTCTGTTTTGTTGGTGAAAAATGGAGGAGAAGTTGTGACTGGTGCTGAGTGCCCCTCTTGTCATAGGCTGTTTTGTGCGCAGTGTAAGGTTCCTTGGCATGAAAAGATGAGTTGTAACGAATTCCAAGAGTTACAAAGGAAGATAAAAAAATTGGATGAAATGTCCCCGGTGCACGAGCTGGATGTGAACACATTATTTGCAAGTTACGTTGAACATTTTCATGGCTTTTGA 786 0.4504 MVLLLSLVTSKTHHALSLRERFAAIVSNFTTSLSAAPSDSPCHHGARRRMVINSSTATLTDGDEKKKSPLLCHHDHDNETNKSDQSSKFFCGICLDDKPVSDMFKVGKCEHSFCTHGISKHVATQMHQNILVVMCPNPKCSMELKPEYLHAILPREVLVRWKCAMFESLIVESEKTYYYCPFKDCSVLLVKNGGEVVTGAECPSCHRLFCAQCKVPWHEKMSCNEFQELQRKIKKLDEMSPVHELDVNTLFASYVEHFHGF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00607 261 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 66 235 - -
Gma18g00607 261 Pfam IBR domain, a half RING-finger domain 164 223 IPR002867 -
Gma18g00607 261 ProSiteProfiles TRIAD supradomain profile. 87 261 IPR044066 -
Gma18g00607 261 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 235 IPR031127 GO:0004842|GO:0016567
Gma18g00607 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 172 IPR013083 -
Gma18g00607 261 SUPERFAMILY RING/U-box 169 228 - -
Gma18g00607 261 SMART ibrneu5 159 223 IPR002867 -
Gma18g00607 261 SUPERFAMILY RING/U-box 86 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00607 Gma-Chr18 5951537 5952322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00607 91 234 C3H Transcription Factor Family AT2G19610 26.797 1.24e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00607 K11975 - gmx:102663173 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00607 18 5951537 5952322 Gma11g01985 11 31002297 31002845 GST