Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00606 ATGTTCAAAGATGGCAAGTGTAACCACCCCTTTTGCACTCACTGCATATCAAAACACGTGGTGACTCAAATACATCAAAGTATTCTCAAGGTCATTTGTCCAGACCCCAACTGTTATGTGGAATTTAAGCCTGAATATTTGCGTACCATCTTGCCTTGTGATGTCATTGATAGATGGGAATGTCTGAGACGTGAGTCTTTGATTCTTGGGTCGGAGAAGACTTACTGCCCTTTTAAGGATTGTTCGGTTTTGTTGGTGAATCAGGGAGGAGAAGTTGCCACCAGTGCTGAGTGTCCCTCTTGTCATAGGCGATTTTGTGCACATTGTAAGGCTCCTTGGCATGGAAGGAAGAAATGTAAGGAATTCCAAAGGGTGAAAAAGAATGAAAAAAAGTTGGATAAGAAGTTTTTCAATTTGGCAAAGGAAAAAAATTGGAAGAAATGCCCCCACTGCACTATGTTTGTCCAGAGATGTGGTGGATGTGACCACATTGCCTGCAGGTGTGGATGCAACTTCTGCTACATTTGTGGGAAGAATTGGAACCCTGAACATCGATGCATGATAATGAGGAGAATAGTTTACGACCTTTATCAGAGAACTGTGGGTTGGTTCAGGCGTGCCAATTTGCGTTTTTCGGGGGGCCGAAATTCGTCAATGAATTGGTGA 666 0.4309 MFKDGKCNHPFCTHCISKHVVTQIHQSILKVICPDPNCYVEFKPEYLRTILPCDVIDRWECLRRESLILGSEKTYCPFKDCSVLLVNQGGEVATSAECPSCHRRFCAHCKAPWHGRKKCKEFQRVKKNEKKLDKKFFNLAKEKNWKKCPHCTMFVQRCGGCDHIACRCGCNFCYICGKNWNPEHRCMIMRRIVYDLYQRTVGWFRRANLRFSGGRNSSMNW 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00606 221 SUPERFAMILY RING/U-box 63 124 - -
Gma18g00606 221 ProSiteProfiles TRIAD supradomain profile. 1 195 IPR044066 -
Gma18g00606 221 SUPERFAMILY RING/U-box 135 187 - -
Gma18g00606 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 70 IPR013083 -
Gma18g00606 221 SUPERFAMILY RING/U-box 5 66 - -
Gma18g00606 221 Pfam IBR domain, a half RING-finger domain 134 186 IPR002867 -
Gma18g00606 221 Pfam IBR domain, a half RING-finger domain 63 119 IPR002867 -
Gma18g00606 221 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 186 - -
Gma18g00606 221 ProSitePatterns Zinc finger RING-type signature. 7 16 IPR017907 -
Gma18g00606 221 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 186 IPR031127 GO:0004842|GO:0016567
Gma18g00606 221 Gene3D - 117 200 - -
Gma18g00606 221 SMART ibrneu5 130 186 IPR002867 -
Gma18g00606 221 SMART ibrneu5 57 119 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00606 Gma-Chr18 5947926 5948720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00606 2 177 C3H Transcription Factor Family AT2G19610 30.645 5.41e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00606 K11975 - gmx:102668873 270.396