Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00594 ATGACACACCACACCATGGAGGAGGACTTGAACATCTTGGAGGTTAACACTGAGCCTTGCAACAACAATGCTATTACAAGTGCAAAGATTGCACCACCACAGGGAAAGAACCTTAGTCCAAATGTAACAAAGAAGTGTCTATTTCTGGTCACCAAACTTCGCTTCCAAATGCTCGGCAATTTCACAACCAATTTGCGAGAGGTCATTTTTGGGACTAAGCTTGCAGTGCTTTTTCCTGCTGTCCCTTTAGCTGTTGTTGCAGATTTTTATAAACTTGGAAGACCTTGGATTTTTGCTTTGAGCCTACTTGGACTCACCCCTCTAGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCGTATTACACTGGCCCCACAGTTGGAGGGCTTCTGAATGCAACCTGTGGTAATGCAACTGAGATGATCATATCTTTGCTAGCACTTCACCAAAACAAAGTAAATGTTGTGAAGTTCTCTCTGCTGGGATCTATTTTCTCAAACCTTCTATTAGTTCTTGGAAGCTCACTCCTTTGTGGTGGCTTAGCCAACCTTAGGAAGGAACAAAGATATGACAGAAAACAGGCAGATGTAAACTCACTACTTTTGTTGCTGGGGTTGCTATGCCATTTGCTGCCATTACTGCTCAGATATGCCTTAGCAGGAGAATATCCTTCTATAGCCACTAGTAATCTACAATTGTCAAGAGCAAGCAGCATTGTTATGCTTCTAGCATATGCTGGATACATCTTTTTTCAATTAAAAACACATCGACAACTTTTTGATGCACAAGAGGAAGATGAAAATGAAGATGAAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTTCTTGGTTGGTCGGTATGACACTTATCATATCTCTGCTTTCTGAATATGTTGTTGCAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATTTTGTTACCAATTGTTGGGAACGCTGCAGAACATGCTGGCTCAATCATATTTGCTTTCAAGAACAAGTTGGACATATCTTTGGGGGTTGCTATGGGATCTGCAACCCAAATTTCTATGTTTGTGGTTCCATTTAGTGTGGTTGTTGCATGGATAATGGGTATAGAAATGGACTTGGATTTCAATCTCCTTGAAACTGGGTGTCTTGCTTTTACAATTATTGTTACAGCATTCACTTTGCAGGATGGAACTTCACACTACCTGAAAGGAGTGGTTCTTTTCCTGTGTTACATCATCATTGCTGCATGCTTTTTTGTTCATAAAACTAGTACTCCACTAATCAATCAAGCATAG 1311 0.4081 MTHHTMEEDLNILEVNTEPCNNNAITSAKIAPPQGKNLSPNVTKKCLFLVTKLRFQMLGNFTTNLREVIFGTKLAVLFPAVPLAVVADFYKLGRPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALHQNKVNVVKFSLLGSIFSNLLLVLGSSLLCGGLANLRKEQRYDRKQADVNSLLLLLGLLCHLLPLLLRYALAGEYPSIATSNLQLSRASSIVMLLAYAGYIFFQLKTHRQLFDAQEEDENEDEEKAVIGFWSAFSWLVGMTLIISLLSEYVVATIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPFSVVVAWIMGIEMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYLKGVVLFLCYIIIAACFFVHKTSTPLINQA 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00594 436 TIGRFAM cax: calcium/proton exchanger 79 424 IPR004798 GO:0006816|GO:0015369
Gma18g00594 436 Gene3D - 125 267 IPR044880 -
Gma18g00594 436 Gene3D - 273 425 IPR044880 -
Gma18g00594 436 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 33 430 IPR004713 GO:0006812|GO:0008324|GO:0016021
Gma18g00594 436 Pfam Sodium/calcium exchanger protein 281 422 IPR004837 GO:0016021|GO:0055085
Gma18g00594 436 Pfam Sodium/calcium exchanger protein 96 253 IPR004837 GO:0016021|GO:0055085
Gma18g00594 436 PANTHER VACUOLAR CATION/PROTON EXCHANGER 33 430 - -
Gma18g00594 436 TIGRFAM caca2: calcium/proton exchanger 61 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00594 Gma-Chr18 5847360 5852236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00594 44 427 Antiporters AT2G38170 70.256 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00594 K07300 - gmx:100778821 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00594 18 5847360 5852236 Gma18g00594 18 5847360 5852236 ECH
Gma18g00594 18 5847360 5852236 Gma11g01967 11 28783296 28787123 GST
Gma18g00594 18 5847360 5852236 Gma14g01921 14 49888162 49892964 PCT
Gma18g00594 18 5847360 5852236 Gma02g02143 02 47215857 47221376 PCT
Gma14g01921 14 49888162 49892964 Gma18g00594 18 5847360 5852236 PCT
Gma02g02143 02 47215857 47221376 Gma18g00594 18 5847360 5852236 PCT