Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00573 ATGTCTTGTTCTGTGGCAGTTCCCACTTCCCCAGTGTTCTCTTTCTACAACAACAATAACAACGTTAACTCTTCCACCGCAGAACCTCTCATGCTCTCTCTTCCCATTCCCTCTACGACGCCGTCTTGCTCCTCATTATCTCCACCCTCCTCTCCCTTGTTGAAGAGAAAGAGACCCGCCAAAATCGACATTCCCGTCGCTTCTATCGCTTTTGCTGTCTCGCCGACGGCGGCGCCGTCGCCGGCGAGGGACGCCTTCGAGGTCGACGGACCTGGGTTTTCTGTGTTTTGCAAACGAGGAAGGAGGCATCATATGGAGGATTGTTTCTCCGCTGCCGTTGATCTTCACGGTCAACCAAAACAGGCCTTTTTCGGGATATTTGATGGGCATGGGGGAACAAAGGCTTCGGAATTCGCTGCACATAACTTGGAAAAGAATGTGTTGGAGGAGGTGGTTAGGAGAGATGAAAATGACATTGAGGAGGCAGTGAAGCATGGTTACCTCAACACAGATTCTGAATTCTTGAAGGAGGATCTTAATGGTGGCTCTTGCTGTGTGACAGCATTGATCAGGAATGGTAACCTTGTTGTGTCCAATGCTGGAGATTGTCGTGCTGTGATTAGCATAGGGGGTGTGGCAGAAGCCCTAACATCTGATCACAAGCCTTCTAGAGAAGATGAAAGGGACAGAATTGAGACTCAGGGTGGCTATGTTGATGTGTGCCGTGGTGTATGGAGGATACAAGGGTCATTGGCTGTTTCTAGGGGAATTGGAGATAGAAACCTGAAACAATGGGTCATAGCAGAACCTGAGACCAAAGTTCTTAAAATTGAACCTCAGCATGACTTGTTGATCTTAGCTTCAGATGGATTATGGGAAAAGGTTAGCAATCAGGAAGCAGTAGATATTGCTCGTCCTTTTTGTGTTGGGAACAATAAACAGCAACCTTTGCTGGCTTGTAAGAAACTCGTGGAATTATCTGTGTCACGAGGCTCTGTGGATGACATAAGTGTTATGATTATCAAATTGCAAAACTACATTTGA 1044 0.4693 MSCSVAVPTSPVFSFYNNNNNVNSSTAEPLMLSLPIPSTTPSCSSLSPPSSPLLKRKRPAKIDIPVASIAFAVSPTAAPSPARDAFEVDGPGFSVFCKRGRRHHMEDCFSAAVDLHGQPKQAFFGIFDGHGGTKASEFAAHNLEKNVLEEVVRRDENDIEEAVKHGYLNTDSEFLKEDLNGGSCCVTALIRNGNLVVSNAGDCRAVISIGGVAEALTSDHKPSREDERDRIETQGGYVDVCRGVWRIQGSLAVSRGIGDRNLKQWVIAEPETKVLKIEPQHDLLILASDGLWEKVSNQEAVDIARPFCVGNNKQQPLLACKKLVELSVSRGSVDDISVMIIKLQNYI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00573 347 SMART PP2C_SIG_2 103 343 IPR001932 -
Gma18g00573 347 Gene3D - 91 347 IPR036457 -
Gma18g00573 347 SUPERFAMILY PP2C-like 92 345 IPR036457 -
Gma18g00573 347 ProSiteProfiles PPM-type phosphatase domain profile. 92 343 IPR001932 -
Gma18g00573 347 Pfam Protein phosphatase 2C 94 336 IPR001932 -
Gma18g00573 347 CDD PP2Cc 92 343 IPR001932 -
Gma18g00573 347 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 3 346 - -
Gma18g00573 347 PANTHER PROTEIN PHOSPHATASE 2C 3 346 IPR015655 GO:0004722|GO:0006470
Gma18g00573 347 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Gma18g00573 347 SMART PP2C_4 80 341 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00573 Gma-Chr18 5558314 5560499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00573 1 347 PP2C-type Phosphatase Gene Family AT2G30020 57.431 4.91e-149 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00573 K17506 - gmx:100818903 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00573 18 5558314 5560499 Gma18g00573 18 5558314 5560499 ECH
Gma18g00573 18 5558314 5560499 Gma11g01909 11 24061180 24063036 GST
Gma18g00573 18 5558314 5560499 Gma14g01937 14 50128419 50130395 PCT
Gma18g00573 18 5558314 5560499 Gma02g02160 02 47452546 47454990 PCT
Gma14g01937 14 50128419 50130395 Gma18g00573 18 5558314 5560499 PCT
Gma02g02160 02 47452546 47454990 Gma18g00573 18 5558314 5560499 PCT