Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00572 ATGGGTTTTTCTTGGATAAGAGGGAAGTGCATTGGTAAGGGCGCGTTTGGCACCGTCAGCGTCGCGCTTCGCAAACGCGACGATCAAACTCAAAATTTCGCGGTGAAGTCCGTGGATTTAAAAACGGGTCTCCCGGGTCAGCTCGAAGCGTTGGAGAATGAGATTCGGATTCTCCGGCGCATGTCCTCTCCGCACGTGGTAACTTTTCTCGGCGACGACGCCACGTGCGAGCAGCGGAACCTTCACATGGAGTACATGCCACGTGGTACGCTCGCTGACCTGGACGCTGACGTGGACGAAGTTTTAGTGAGACGCTACACGTGGTGCCTTGTGAGCGCGCTGAAGCACGTGCACTCAAACGGCGTCGTTCACTGCGACGTGAAAGGAAAGAACGTCCTCGTCGGAGACGGAGGGAAAGGTTTCAATTGCAAACTCGCCGACTTCGGATCGGCGGCGGAGTTCTCCGGCGAGGGGTTTCCGGCGGTGGTGCCGCGCGGGAGTCCGCTGTGGATGGCGCCGGAGGTGATTCGCCGGGAGTGGCAGGGTCCGGCGTCGGACGTGTGGTCGTTGGGATGCACGGTGATCGAGATGCTCACCGGAAAACCGCCGTGGGAGGGAAACTCCTTCGACGCGCTGAGTCGGATCGGGTTCTCCGGCGAGGTGCCCGAATTTCCGAGGCGGTTGTCGGAGCTCGGAAGGGATTTTCTGGAGAAGTGTTTGAGGAGGGAACCGTGGCGGCGGTGGAGCTGCGATCAGCTGCTGCAGCATCCGTTTTTGTTGCCGTGTGGCGAGATTGCGGAATCGTCGCCGCGGTGTGTTCTCGACCGAGTTGACACGGAGTTCGCCGAGTTCGACCAAGAAGAAGAAGAAGAAGAAGAAACGAGAATTGAAAATGAAAATTTTGCGAGGAGTAGAATTGGAAAACTGGCGATGAGGGTAAGGGTAAATTGGGAAACAGAAGGTTGGGTGGTGGTGAGGGAATTCGCTTCCGATGCGGAACCGGCGGTGGCGGTTGACAGTTCTGAGGACGTTAAAGACGGGGCATGTCCGGGAAATATTGGGAGCGTGAGGGTAGAAAAGGGACTTCATGTAGGGACAAATTTGGAATTTAAAGGGGTAACCTTTGCATTATACTCACTTCTCTGTCGAAATGGAAGACTAAGCATTTTACCCAATCAACAATCCATAGATGAGAAATTGTCTACTTATGCCACAGAGGATTCTGCAGACACATGGCAGTGTTCTGTTGTGAAGTTATTCTTTGAAAAGCACCCAGGGATTCGGAAAGGACTTCTGATCTTTGTCCTGCTAGGAACCTTGGGGCTATTTTCCATTCAGCATCATGGCACACATAGAGTTGCTTTTTTGTTTGCTCCAGTTGTTGCAATATGGCTTTTGTGTATCAGCAGTATTGGTATATACAACATATTCCACTGGAACCCGAAAATATACCGTGCACTTTGCCCAATCTACATGGTGAAGTTCATCAAAACAATTGGGATTGAAGCATGGTTGTCATTAGGAGGAGTGGTGCTTTCAATCACAGGTGTGGAGACCATGTTTGCTAACTTGGGCCATTTTTCTGCTCTCCCTATAAAGATAGCTTTCACATGTCTAGTATATCCCTGCCTCATTCTGGCATATATGGGTGAGGCTGCATTCCTCTCTAGGCATCATGAAGACATTCGAAGAAGTTTCTACAAAGCCATACTAGGCAAGAATTTAGAAGCTGTGTTTTGGCCAGTGTCCACAGTGGCAACTTTTGAAGCCATTTTAAGAAGTCAAGCAGTAATTTCTGCTACCTTTTCCATCATAAGCCAGTGCCATGCATTAAATTGTTTTCCTTCAGTGAAGATTATTCATACTTCAACCAGAATATATGGGAAGATATACATCCCAGAAGTCAATTGGATATTGATGTGCTTTTGTTTAGCTATCACAATTGGCCTAAGGGACACTAACGTGATAGGTCATGCATATGGGCTGGCAGTCATCACTGTTATGTTTGTGACAACATGCTTGATGACATTAGTAATTGTGATTGTGTGGAAGCAAGGAATAATAAAAGCCATTGCATGTTTGCTGTTGTTCGGATCAATTGAACTTCTTTACATCTCAGCTTGTATCTGCAAGGTCCCTGAAGGAGGGTGGATCTCACTTGTGCTGTGCTTTATCTTTAATTGTATAATGTACACATGGAACTATGGAACAATGAAGAAACACCAATTCGATGTGGAAAACAAGGTTTCAATGAATAGGATGCTATCTATGGGACCTTCCCTCGGTATGGTTCGTGTCCCGGGAGTAGGACTCATGTACTCTAATCTGGCTTCTGGTTTCCCTGCTATGTTTGGTCACTTTGTTACAAACTTGCCAGCATTCCATCAGGTGCTGGTTTTTGTCTGTGTCAAATCTGTTCAAGTCCCTCATGCAGTGAAACTGAACGGTTGGTCATCAGTAGGGTCAGTTCAAAGGAGCTTGGCATGTTTCATTGCATTGTCAGAGGGGGAGAGCATAGAAGAACCAACACATGAATGGTCTGCAAACGATGGAAACTCAAATGTGGAAGATCATGCTGTTTCTCTTTCACAAAACACTTCTGATAAGTCATGTTGTGAAAAGTACTCGCTCCCATCTTCATGTGTTTTGCAGGTAATGATGAATGGTGATAACCATCCTGAAAAGTCTTTCTACAAAGATGAGTCTCTGCAGATTATGAAAGCTAAAGAATTTGGTGTTACCTATATACTAGGCCATTCCCTTGCAAAGGCAAAGAACTCATCTTCCATCCTAAAGAAATTTGCTATAGATGTTGTTTTTGGATTTCTAAGCAAGAATTGCAGAGAGTTTGATGCTGTTCTGGATGTTTCCCATACTTCTTTGCTAGAGGTTGGCATAAAATACTATGTCTAA 2913 0.4682 MGFSWIRGKCIGKGAFGTVSVALRKRDDQTQNFAVKSVDLKTGLPGQLEALENEIRILRRMSSPHVVTFLGDDATCEQRNLHMEYMPRGTLADLDADVDEVLVRRYTWCLVSALKHVHSNGVVHCDVKGKNVLVGDGGKGFNCKLADFGSAAEFSGEGFPAVVPRGSPLWMAPEVIRREWQGPASDVWSLGCTVIEMLTGKPPWEGNSFDALSRIGFSGEVPEFPRRLSELGRDFLEKCLRREPWRRWSCDQLLQHPFLLPCGEIAESSPRCVLDRVDTEFAEFDQEEEEEEETRIENENFARSRIGKLAMRVRVNWETEGWVVVREFASDAEPAVAVDSSEDVKDGACPGNIGSVRVEKGLHVGTNLEFKGVTFALYSLLCRNGRLSILPNQQSIDEKLSTYATEDSADTWQCSVVKLFFEKHPGIRKGLLIFVLLGTLGLFSIQHHGTHRVAFLFAPVVAIWLLCISSIGIYNIFHWNPKIYRALCPIYMVKFIKTIGIEAWLSLGGVVLSITGVETMFANLGHFSALPIKIAFTCLVYPCLILAYMGEAAFLSRHHEDIRRSFYKAILGKNLEAVFWPVSTVATFEAILRSQAVISATFSIISQCHALNCFPSVKIIHTSTRIYGKIYIPEVNWILMCFCLAITIGLRDTNVIGHAYGLAVITVMFVTTCLMTLVIVIVWKQGIIKAIACLLLFGSIELLYISACICKVPEGGWISLVLCFIFNCIMYTWNYGTMKKHQFDVENKVSMNRMLSMGPSLGMVRVPGVGLMYSNLASGFPAMFGHFVTNLPAFHQVLVFVCVKSVQVPHAVKLNGWSSVGSVQRSLACFIALSEGESIEEPTHEWSANDGNSNVEDHAVSLSQNTSDKSCCEKYSLPSSCVLQVMMNGDNHPEKSFYKDESLQIMKAKEFGVTYILGHSLAKAKNSSSILKKFAIDVVFGFLSKNCREFDAVLDVSHTSLLEVGIKYYV 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00572 970 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00572 970 Gene3D Transferase(Phosphotransferase) domain 1 4 320 - -
Gma18g00572 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Gma18g00572 970 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Gma18g00572 970 CDD STKc_MAPKKK 4 259 - -
Gma18g00572 970 PANTHER POTASSIUM TRANSPORTER 442 811 - -
Gma18g00572 970 PANTHER POTASSIUM TRANSPORTER 371 439 - -
Gma18g00572 970 PANTHER POTASSIUM TRANSPORTER 898 970 - -
Gma18g00572 970 TIGRFAM kup: potassium uptake protein 442 970 IPR003855 GO:0015079|GO:0016020|GO:0071805
Gma18g00572 970 Pfam Protein kinase domain 8 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00572 970 Pfam K+ potassium transporter 430 813 IPR003855 GO:0015079|GO:0016020|GO:0071805
Gma18g00572 970 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 442 811 IPR003855 GO:0015079|GO:0016020|GO:0071805
Gma18g00572 970 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 371 439 IPR003855 GO:0015079|GO:0016020|GO:0071805
Gma18g00572 970 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 898 970 IPR003855 GO:0015079|GO:0016020|GO:0071805
Gma18g00572 970 SUPERFAMILY Protein kinase-like (PK-like) 5 260 IPR011009 -
Gma18g00572 970 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00572 Gma-Chr18 5541056 5547513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00572 396 970 Inorganic Solute Cotransporters AT2G30070 56.888 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma18g00572 K_trans 1.2e-113 CL0062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00572 K03549 - gmx:100800428 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00572 18 5541056 5547513 Gma18g00572 18 5541056 5547513 ECH
Gma18g00572 18 5541056 5547513 Gma11g01903 11 23999680 24002127 GST
Gma18g00572 18 5541056 5547513 Gma14g01938 14 50154092 50155690 PCT
Gma18g00572 18 5541056 5547513 Gma02g02161 02 47467272 47471932 PCT
Gma14g01938 14 50154092 50155690 Gma18g00572 18 5541056 5547513 PCT
Gma02g02161 02 47467272 47471932 Gma18g00572 18 5541056 5547513 PCT