Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00569 ATGTCAATCCAACCTGACTCACCCAACAACAACACGTTGACCCAAATGTTTCAGAACATATTCTCAGACAACAGTAACATCATGCTTGCAGCCATCATTTCTCTCCTCCTAGTAATCCTCTTTGTCCTCCTTCTCCACCTCTATGCCAAGTTGTTCCTCGCTCAGGCACAGCCTCAGGCCCACGCCCGCCGCCGCCGGAGGAGGAGGCGGCGAAACACGGTGACAGTCTCCGACGTCCTCGGCCCGGCAAGGTTCCACCACTTCCACAGCTTCAACATAGAAGACAGTTCACCCCTCACAACAAAAGGCTTAGATTCTTCAACCATTAGAACAATTCCACTCTTCATCTATGAACCCAACAACAACAAGGTCCAAGAAGAAGAAGAAGAACTTGAATGTGTAATTTGCTTGAGTGCCTTTGTGAGTGGTGAAGTGGGGAGGTGCTTGCCAAAGTGTGGCCATGGCTTCCATGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCCAATTGTCCTATTTGTAGAGCCTCAATTGTAGCAAGTGTTGAGGAGAATGTTTCTAGGGTGGTGGTTTCATCAAGTGATCATCATCGTGATGAATTATATTACGGTGGAGATCATGATTTGGTTGAGATTGTGATTGAAAGTGGTGGTGCTCCAAGTTCTGAGATTATTAGAGAGGGTGATGGTAATGGAGGAGCAAGAACAAGTGTTTCTGTTGGGTCAGAAACTTCTTCTTCTGAGTTTTTTGGGTGCTCTTTGGAGAGAATGCTTGGCAAGGTTTTCCCATCAAGTAAT 798 0.4649 MSIQPDSPNNNTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKLFLAQAQPQAHARRRRRRRRRNTVTVSDVLGPARFHHFHSFNIEDSSPLTTKGLDSSTIRTIPLFIYEPNNNKVQEEEEELECVICLSAFVSGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRASIVASVEENVSRVVVSSSDHHRDELYYGGDHDLVEIVIESGGAPSSEIIREGDGNGGARTSVSVGSETSSSEFFGCSLERMLGKVFPSSN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00569 266 MobiDBLite consensus disorder prediction 222 245 - -
Gma18g00569 266 CDD RING-H2_EL5_like 133 175 - -
Gma18g00569 266 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 265 IPR044675 -
Gma18g00569 266 PANTHER - 1 265 - -
Gma18g00569 266 SMART ring_2 133 174 IPR001841 -
Gma18g00569 266 Pfam Ring finger domain 132 175 IPR001841 -
Gma18g00569 266 SUPERFAMILY RING/U-box 127 181 - -
Gma18g00569 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 181 IPR013083 -
Gma18g00569 266 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00569 Gma-Chr18 5510927 5511742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00569 5 238 Rapid Response to Elicitors AT3G16720 31.276 9.22e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00569 - - gmx:100816238 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00569 18 5510927 5511742 Gma18g00569 18 5510927 5511742 ECH
Gma18g00569 18 5510927 5511742 Gma11g01899 11 23910128 23915820 GST
Gma18g00569 18 5510927 5511742 Gma14g01942 14 50201522 50202247 PCT
Gma18g00569 18 5510927 5511742 Gma02g02166 02 47530909 47531625 PCT
Gma14g01942 14 50201522 50202247 Gma18g00569 18 5510927 5511742 PCT
Gma02g02166 02 47530909 47531625 Gma18g00569 18 5510927 5511742 PCT