LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma18g00546	ATGGGGGGTACCTCACCTTGTGCTTCTTGCAAGTTGTTGAGACGTCGTTGCTCCAAGGAATGTATCTTTGCTCCTTACTTTCCTTCTGATGACCCTCGCAAGTTTGCCATTGTGCATAAGGTGTTTGGTGCTAGCAATATCAGCAAAATGCTGCAGGAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCAGTGTATGGATCTGTTGGAGCCATATCATACCTACAAAGCCAAGTTTCACAATTGCAAATGCAGCTTGCAGTGGCTCAGGCAGAGATTCTATGCATCCAGATGCAGCAGCAAGAGCCTACCTTAGCCACACAATTAGTAGACCAAGATGACAAATCAATGCTCCTATCTGTAAACAACAACTATGAAATGCTTCCTCAGTTTCTTAACTTTCCTTCATCTTCCTCCTCATCTTCCAATATATTCCAAGACCCTCATGAGCCTCTTAAGAGAGAGTCTTTTTGGACTTAA	519	0.4355	MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPIHQRADAVSSLVYEANARVRDPVYGSVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQQEPTLATQLVDQDDKSMLLSVNNNYEMLPQFLNFPSSSSSSSNIFQDPHEPLKRESFWT	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma18g00546	172	Coils	Coil	85	105	-	-
	Gma18g00546	172	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	2	169	-	-
	Gma18g00546	172	Pfam	Lateral organ boundaries (LOB) domain	6	103	IPR004883	-
	Gma18g00546	172	ProSiteProfiles	LOB domain profile.	5	106	IPR004883	-
	Gma18g00546	172	PANTHER	LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN	2	169	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma18g00546	Gma-Chr18	5161584	5162593	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma18g00546	3	172	AS2 family	AT2G30130	64.211	7.36e-77	226

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LOB	Gma18g00546		LOB	1.8e-41	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma18g00546	-		-	gmx:100819419	302.753

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma18g00546	18	5161584	5162593	Gma18g00546	18	5161584	5162593	ECH
	Gma18g00546	18	5161584	5162593	Gma11g01846	11	21443375	21445038	GST