Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00530 ATGACCACTTCTTTCTCTGACCTTCTTTCTTCTCCCACCACCGACCACAACCTCGGAGTTTCCGAAAGACCTCATCTTAATTCGTCCTCGTCGGATCAAGCAGGTTCTTCTGGTGGTGTGCCGAAATTCAAGTCCACACCCCCTCCTTCTCTCCCTCTTAGCCATCATCTTCCACCAATATTTTCTCCTTCTTCTTACTTTAACTTTAACATTCCTCATGGGTTAAGCCTTGCTGAACTACTTGACTCCCCAGTTCTCCTTAATTCTTCCAACGTTTTGCCATCTCCAACAACTGGATCATTTGCTGGTCAAGGCTTCAACTGGAAGAGCAGTTATGGGGAAAGCCAGCAGCATGTCAAAGAAGAAGACAAGAGCTTCTCAAGTTTCTCCTTTCAAACACAAACACACCCTCCTCTTCCATCTTCAAATGGATTTCAATCTTCAACCGGCATAGTTCAAACCGGATGGAGTTTTCCAGAAATTGCTAAACAAGATGGTTTTGCCTCAAGAATGAGTATGAGCATGGTGAAAACTGAAACCACTTCTGCGATGCAGAGTTTCAACTCTGAGAATAATAACCACAGGAATGGTTTTCAATCAGATCATAAAAATTACCAACCACCACAAGTTCAGACCTTAAGCAGAAGATCAGATGATGGGTACAATTGGAGGAAATATGGACAAAAGCAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAGTGCACATACCCTAATTGTCCAACAAAGAAAAAAGTTGAGAGATCCTTAGATGGACAAATTACTGAGATAGTTTACAAAGGCACTCATAACCATCCCAAGCCTCAAGCTGCGAAGAGGAACTCATTGTCTGCCTCATCACTTGCAATTCCTCATTCAAATCATGGCGGCATTAATGAACTACCACATCAAATGGATTCGGTTGCCACTCCTGAAAACTCATCAATATCAATGGAAGATGATGATTTTGATCATACTAAATCAGGAGGAGATGAGTTTGATAATGATGAACCTGATGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGTATGCCAGCTATAGAAAGTAGAACAGTGAGAGAACCCAGAGTTGTGTTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACAGGTGGAGGAAATACGGGCAGAAAGTGGTCAAGGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACATTCCCTGGATGTCCAGTGAGGAAGCACGTAGAGAGAGCCTCACAAGACCTAAGGGCAGTGATCACAACCTATGAGGGAAAACACAACCATGACGTGCCTGCAGCACGTGGAAGTGGCAACAACTCTATGAATAGATCATTGCCAATAACCAATACCACAAACAACACTAGTGCAGCAACTTCTCTATACACTAATAACAATTCTCTTCAGAGTCTTAGACCACCAGCAGCACCAGAAAGGACATCATCACATTTCAACCCCAACATGCAGCAGAGTTCATCAGGAAGTTTTGGATTCTCAGGGTTTGGAAATCCATTAATGGGGTCTTACACGAATCAACAATCTGACAATGTTTTCATCACTAGAGCCAAAGAGGAGCCTGGAGATGACTCGTTTCTTGACTCTTTCCTATGCTAA 1629 0.426 MTTSFSDLLSSPTTDHNLGVSERPHLNSSSSDQAGSSGGVPKFKSTPPPSLPLSHHLPPIFSPSSYFNFNIPHGLSLAELLDSPVLLNSSNVLPSPTTGSFAGQGFNWKSSYGESQQHVKEEDKSFSSFSFQTQTHPPLPSSNGFQSSTGIVQTGWSFPEIAKQDGFASRMSMSMVKTETTSAMQSFNSENNNHRNGFQSDHKNYQPPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQAAKRNSLSASSLAIPHSNHGGINELPHQMDSVATPENSSISMEDDDFDHTKSGGDEFDNDEPDAKRWRIEGENEGMPAIESRTVREPRVVFQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASQDLRAVITTYEGKHNHDVPAARGSGNNSMNRSLPITNTTNNTSAATSLYTNNNSLQSLRPPAAPERTSSHFNPNMQQSSSGSFGFSGFGNPLMGSYTNQQSDNVFITRAKEEPGDDSFLDSFLC 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00530 542 MobiDBLite consensus disorder prediction 1 40 - -
Gma18g00530 542 Pfam WRKY DNA -binding domain 378 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma18g00530 542 Pfam WRKY DNA -binding domain 218 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma18g00530 542 ProSiteProfiles WRKY domain profile. 372 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma18g00530 542 ProSiteProfiles WRKY domain profile. 218 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma18g00530 542 MobiDBLite consensus disorder prediction 187 221 - -
Gma18g00530 542 MobiDBLite consensus disorder prediction 126 146 - -
Gma18g00530 542 MobiDBLite consensus disorder prediction 112 146 - -
Gma18g00530 542 MobiDBLite consensus disorder prediction 292 339 - -
Gma18g00530 542 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 26 509 - -
Gma18g00530 542 MobiDBLite consensus disorder prediction 1 51 - -
Gma18g00530 542 SUPERFAMILY WRKY DNA-binding domain 369 437 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma18g00530 542 Gene3D WRKY domain 206 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma18g00530 542 MobiDBLite consensus disorder prediction 319 339 - -
Gma18g00530 542 SUPERFAMILY WRKY DNA-binding domain 216 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma18g00530 542 Gene3D WRKY domain 364 430 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma18g00530 542 SMART WRKY_cls 377 436 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma18g00530 542 SMART WRKY_cls 217 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma18g00530 542 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 509 IPR044810 GO:0003700
Gma18g00530 542 MobiDBLite consensus disorder prediction 187 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00530 Gma-Chr18 4998201 5001717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00530 40 541 WRKY Transcription Factor Family AT2G38470 44.199 3.90e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma18g00530 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00530 K13424 - gmx:100127397 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00530 18 4998201 5001717 Gma18g00530 18 4998201 5001717 ECH
Gma18g00530 18 4998201 5001717 Gma11g01827 11 21057555 21061575 GST
Gma18g00530 18 4998201 5001717 Gma14g01974 14 50603541 50606495 PCT
Gma18g00530 18 4998201 5001717 Gma02g02195 02 47904878 47907873 PCT
Gma14g01974 14 50603541 50606495 Gma18g00530 18 4998201 5001717 PCT
Gma02g02195 02 47904878 47907873 Gma18g00530 18 4998201 5001717 PCT