Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00516 ATGGAGATATCATTGTTAAAAATGATCGTAAATGGAATGTCCTCATTTTTGCATTTATCTTTTTCTGGAAACATGAACTCTGAACCTGTCTCAAAGTATTACCAGAAGGCAGAGGAGATACATAAGTTGTTGAAGCCAATCATTGATGCAATTGTTAATCCTGAGTTAGCTTCTGATGAAGTGCTTAATAAGATATTGGAAGAAATTGGTTTTGCTGTTAATGAGTTAAAGGAGCATGTTGAGAACTGGCACCTATTATCTAGCAAAGTATACTTTGTTATGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGATTCTCAGCATTGTCTCCCTGATGAATTAAGTTCTGAATATTTACAGCTCTGTTCACAAAAACTTAAGCTTTTGGGACATGAAGAAATCTCCCCAGTCATTAAGGAAGCTATTACAGAACACTTGGAAAATGTAGGACCCAGTTCAGAGCTCCTGACAAAAATAGCTGATAGCCTGGGCCTAAGGTCTAATCAGGAGGTTCTTATTGAGGCAGTGGCCCTCGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAAGACTGCAGAAGCTGAATTCATTGATCAAATGATTGCTGTTGTAACGCGAATGCATGAGCGTCTTGTTATGCTTAAACAAGCCCAGAGTAGCAGCCCAGTTTCAATACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCCGTGATTGTGGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGACTCTGGTTCATACCCACTTAATACCTAATTATACTGTAAAAGCACTAATTGCAAATTGGTGTGAATCAAACAATGTGCAACTGGTTGATCCCACAAAATCCACAAATTTAAATCAAGCATCTGTCCTTCATGGTTATATGGAATCTGGTACAACCAGGGAATCACCTGTTTTTGCTCATTCCAGGAGCAACCAGCCATCCTCACCTGAGTCAGCACGTTCTTGTTCTTTTAGTTCACCAGCTAATAACTTAACTTCTGGTGGAACTCAGCGAGAGGGAACATCACCTTTGCATCCCCGTTCAACTTCAGAAGGCTCCTTCAGAGGTATGGTTAATGGGCAATATATGGATCTTGCTAGAATATCTCCTGAAGGTTTGGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTGGATTCAGCTAGCCATCCATCAATGTCACCATCTAGAAGGGAATCTTCCAGTGCCTTCAGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGATTCCAGTGCACTTTCTAATGCAAATTTTCCCCAAGAAACACAAGATGATGACAACAATGCTCCTCAGCTGTCAACAAGTGCAGGGCACAGTAGAGAAGCTTCTGGTGAATTAAATCCAGGGACAGAAACTGGTGGTACTACTGCCGTGCCATCAGTGCATAGAGAACCTGAGTTCCCACTCCGATTGGAGACAAGGTCTCGAAGTCAAGCCATTTGGAGGCGGCCATCAGAGAGGCATGTTCCTAGGATAGTATCTTCTCCTGTTGTTGAAACAAGAGCTGATCTTTCTGCTATTGAAACCCAGGTTCGGAATTTGGTTGAGGGGTTGAGGAGCTCTGATGTTGATACTCAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAATAGAATTGCGATTGCAAACTGTGGAGCCATTAACTTATTAGTTGATTTACTTCAATCAACTGATACAACAATCCAAGAAAATGCTGTTACTGCACTTCTAAACTTGTCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTGCTTGAGACTGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCTATTGGACCACTGGTAGAATTATTGGGAAGTGGAACCCCTCGGGGAAAGAGAGATGCTGCCACTGCTTTATTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGACTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCGGTTGCCGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTGATGAAGGTGGTATTCCTGTTCTGGTTGAGGTTGTGGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCAGCTGCAGCTCTTCTACATCTTTGCTTACATAGTCCCAAATTTTCAAGCAAGGTGCTTCAACAAGGAGCTGTCCCGCCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCTCAGGCTCTCCTCAATCAATTTAAAAGTCAAAGACATGGGAGTTCTGGGAGGGGCTGA 2517 0.4287 MEISLLKMIVNGMSSFLHLSFSGNMNSEPVSKYYQKAEEIHKLLKPIIDAIVNPELASDEVLNKILEEIGFAVNELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLNIFQQLKDSQHCLPDELSSEYLQLCSQKLKLLGHEEISPVIKEAITEHLENVGPSSELLTKIADSLGLRSNQEVLIEAVALERLKENAEQTEKTAEAEFIDQMIAVVTRMHERLVMLKQAQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLVHTHLIPNYTVKALIANWCESNNVQLVDPTKSTNLNQASVLHGYMESGTTRESPVFAHSRSNQPSSPESARSCSFSSPANNLTSGGTQREGTSPLHPRSTSEGSFRGMVNGQYMDLARISPEGLDDRSASSDESSVDSASHPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSNANFPQETQDDDNNAPQLSTSAGHSREASGELNPGTETGGTTAVPSVHREPEFPLRLETRSRSQAIWRRPSERHVPRIVSSPVVETRADLSAIETQVRNLVEGLRSSDVDTQREATAELRLLAKHNMDNRIAIANCGAINLLVDLLQSTDTTIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIGPLVELLGSGTPRGKRDAATALFNLSIFHENKNRIVQAGAVRHLVDLMDPAAGMVDKAVAVLANLATIPEGRNAIGDEGGIPVLVEVVELGSARGKENAAAALLHLCLHSPKFSSKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFKSQRHGSSGRG 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00516 838 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Gma18g00516 838 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Gma18g00516 838 MobiDBLite consensus disorder prediction 417 501 - -
Gma18g00516 838 Pfam Armadillo/beta-catenin-like repeat 668 705 IPR000225 GO:0005515
Gma18g00516 838 Pfam Armadillo/beta-catenin-like repeat 625 664 IPR000225 GO:0005515
Gma18g00516 838 Pfam Armadillo/beta-catenin-like repeat 586 623 IPR000225 GO:0005515
Gma18g00516 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 718 759 IPR000225 GO:0005515
Gma18g00516 838 SUPERFAMILY RING/U-box 226 313 - -
Gma18g00516 838 MobiDBLite consensus disorder prediction 338 391 - -
Gma18g00516 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 677 719 IPR000225 GO:0005515
Gma18g00516 838 SUPERFAMILY ARM repeat 555 827 IPR016024 -
Gma18g00516 838 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 833 - -
Gma18g00516 838 Coils Coil 179 209 - -
Gma18g00516 838 MobiDBLite consensus disorder prediction 406 512 - -
Gma18g00516 838 Gene3D - 538 833 IPR011989 -
Gma18g00516 838 CDD RING-Ubox_PUB 240 282 IPR045210 -
Gma18g00516 838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 317 IPR013083 -
Gma18g00516 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 595 637 IPR000225 GO:0005515
Gma18g00516 838 PANTHER U BOX DOMAIN-CONTAINING 7 833 - -
Gma18g00516 838 MobiDBLite consensus disorder prediction 338 392 - -
Gma18g00516 838 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Gma18g00516 838 SMART arm_5 584 624 IPR000225 GO:0005515
Gma18g00516 838 SMART arm_5 538 582 IPR000225 GO:0005515
Gma18g00516 838 SMART arm_5 625 665 IPR000225 GO:0005515
Gma18g00516 838 SMART arm_5 707 746 IPR000225 GO:0005515
Gma18g00516 838 SMART arm_5 747 787 IPR000225 GO:0005515
Gma18g00516 838 SMART arm_5 666 706 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00516 Gma-Chr18 4849706 4853432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00516 196 838 U-box Gene Family AT2G23140 63.199 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00516 - - gmx:100811250 1576.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00516 18 4849706 4853432 Gma11g01805 11 20621784 20629690 GST
Gma18g00516 18 4849706 4853432 Gma14g01988 14 50814315 50817185 PCT
Gma18g00516 18 4849706 4853432 Gma02g02209 02 48078017 48087513 PCT
Gma14g01988 14 50814315 50817185 Gma18g00516 18 4849706 4853432 PCT
Gma02g02209 02 48078017 48087513 Gma18g00516 18 4849706 4853432 PCT