Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00498 ATGGCCACAGGAAAGCTGAAACTCACATTCGTAGCCAACGATTCTCAAAGAAAAACAGTATGCAAGAAAAGGAAGCAGTCACTGCTGAAGAAAACGGAGGAACTCAGCACCCTTTGTGGCATTGAAGCATGTGCTATAGTTTATGGCCCCAATGATCATCGGCCAGAGATCTGGCCATCTGAATCGGGTGTCAAAAATGTACTGGGAAAGTTCATGAACAAGCCACAATGGGAGCAAAGCAAAAAGATGATGAACCAAGAGAGTTTCATTGCACAAAGTATCATGAAGAGTAAAGACAAGTTACAGAAAGTTGTGAAGGAAAACAAGGAGATTGAAATGTCCTTGTTCATGGCTCAGTGCTTTCAGACAGGTATGTTTCAGCCTGATATCAATATGACCGCAGCTGATATGAATGTTCTTTCATCGGAGATTGAACAGAACCTGAAGGACATTGATAAAAGGATGGAAATGCTGAAAGCCAACCAGatgcaaacaccTGCACCTGAAGAGATGACACTGATGAATTATGGCTATGGGTCGGGTATGAATGCAAATCACATGCATAGGCAGAAGTTTAATGGTAATGGGTATGAGACAATAATGCCTGCATTTGGAGGTGCCAAACTCCCTCTCTAA 636 0.4167 MATGKLKLTFVANDSQRKTVCKKRKQSLLKKTEELSTLCGIEACAIVYGPNDHRPEIWPSESGVKNVLGKFMNKPQWEQSKKMMNQESFIAQSIMKSKDKLQKVVKENKEIEMSLFMAQCFQTGMFQPDINMTAADMNVLSSEIEQNLKDIDKRMEMLKANQMQTPAPEEMTLMNYGYGSGMNANHMHRQKFNGNGYETIMPAFGGAKLPL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00498 211 PANTHER MADS BOX PROTEIN 2 164 - -
Gma18g00498 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Gma18g00498 211 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Gma18g00498 211 CDD MADS_SRF_like 5 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gma18g00498 211 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 2 164 - -
Gma18g00498 211 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Gma18g00498 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma18g00498 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma18g00498 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma18g00498 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma18g00498 211 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Gma18g00498 211 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00498 Gma-Chr18 4643267 4644253 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00498 1 159 Type I MADS-box Gene Family AT5G48670 46.541 1.53e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma18g00498 SRF-TF 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00498 - - gmx:100794409 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00498 18 4643267 4644253 Gma11g01995 11 33092917 33093828 GST