Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00495 ATGACCAGAAAAAAGGTGCAACCCGCATTCATTTCGTTTGATTCTGCAAGGAAGTTAACATACAAGAAAATGAAGAAGGGAATGCTAAAGAAGATTGATGAACCCAGCACCCTTTGCGGCATTGAGGCATGCGCCATAGTTTATAGCCCAAGGATCCTGAGGCAGAGGTTTGGCCATCCCATTGGGGCGTGCAGAGGGGCTCGTCCTGATAATAACATGACTATTGCTAATTTGAATTTTCTTTCACGGATGGTTGATCAGAACCTGAAGGACATTGATAAAAGGATGGAAACTCTGAAAGTTAATGAGATGACACAAAATATTCAACCCCAGATGCAAACTCCAGCATTGAATTATGCCCTAGGGTCGGATATGAATACTGCTGAGCCCATGCAAAACCTGTGGTTTATGGACTTTCTTAATAATGGTGATGGGGATGAGAGATTAATAATGCCTGCATTTGGTGATGCTAATAATTCAACTCCAAACTGGCTTTTGGTCAAACCTGTTGCCTTGAAAAAAAGGGATGTGCTTGTTACCAGTCCTTTGGGGGATCATGTTTCAGTTGAATTTTCATTTGCTTGGTTTGGTTATTTTTACTGTCCATGTGTGTCAATGTGA 621 0.4155 MTRKKVQPAFISFDSARKLTYKKMKKGMLKKIDEPSTLCGIEACAIVYSPRILRQRFGHPIGACRGARPDNNMTIANLNFLSRMVDQNLKDIDKRMETLKVNEMTQNIQPQMQTPALNYALGSDMNTAEPMQNLWFMDFLNNGDGDERLIMPAFGDANNSTPNWLLVKPVALKKRDVLVTSPLGDHVSVEFSFAWFGYFYCPCVSM 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00495 206 SUPERFAMILY SRF-like 1 51 IPR036879 GO:0003677|GO:0046983
Gma18g00495 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma18g00495 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Gma18g00495 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma18g00495 206 PANTHER MADS BOX PROTEIN 2 53 - -
Gma18g00495 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma18g00495 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma18g00495 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma18g00495 206 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 53 - -
Gma18g00495 206 Gene3D - 14 114 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00495 Gma-Chr18 4629898 4630693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00495 1 50 Type I MADS-box Gene Family AT3G05860 60.000 8.47e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma18g00495 SRF-TF 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00495 - - gsj:114373167 116.701