Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00486 ATGGGTTCCAACATTTGCGTTGTGAATGGTTCGTGCACTCACGAATGGAGAAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTATGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCTTGACCCGTTATCTGCTTACGAGAATTCAGTTTTCTGCAATAAATTCCACTGCCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGCGGATGCATAGTATCTAGATCTTTGTTCGAGTATCTTGACTTTGGTGGCATAGGTTGTGTGAGCTGTGTAAATACTACCCAACTTAGTATGATGAGGAATATGGAAAATCCAAATGTGACTGTTTTGTCGATAAAAAATAATGCGGGTGATCGGCATTCTGCTCATTTTGATGGCAGACTGCCTGTGGGTGGTGTTGATGAAGGAAAACTTATGCAATTCTGCAAAATTATCGAAGCTAGTGAATCCAGCCGTTGGAATCATGCTCAAAGAGATGGCATAATTGCACATCGTGGGCAAAAAAACCAAGAAGCCAAGAGTTCATTCAGGGAAGTGGAAATTGGATTTTCAAATGTGATGAATCCATCTGTTCAATCATTGACATTTGCTACATTAGAAAATAATAGGTCAACATGGGAGATTAAAAACATGCATGAATCAAATACAAAACCATCTTTGAGTATGTATCTGGGAAATGCATCAGGGAACAACTCTGTCCCACCTTCTGCTGGAGAGGCTGTAGAAGGAAGACTTGATGGAAAAACATCTCCTCCCTTTCAAGGATCACGCTCTATATTTCCTAAACCATTGAAGAATGGGCTTACCATGAATATGGAAACAAATAAAGGTACAATGTCTCAATCACGTGTTGCTCGGCCACCTGCAGATGGCAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCGAGGATTACTGATGAAGAGCTAGAGCGATTGGCTGGAGATTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCATATTTTCCTCCTATTTCACAATCTGAAGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTATTGGAGGGTGTGACTCCTTGCATACAGGCCATGCAATTATGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCCGGAGGCAAACTTGTTATGGGTTTCAGAAAGGCATCTAATTCTACAGATACACAGGATGCCTCCACATCTGCACAATCTAATTCAGCAAAGGGAACCGTCTCTTCTGGTACCGAGAATCTGCCATCAGGAAGTAATAATGCCGATCTTCTCCATTCATTGACAGGGAATGTTGAATGTCACTTAAATGGACATACAGAGCATCTGCATTTGGGTACTGGAACTGCTGGATTGCTTAAAACTGAAAATAATGAGATGACAAACAGTAGTTCACCACAACAACAAATTTCCGTTTTAGAGAAGAAGAGGACTCGCAATATTGGGCCTAAAAGTAAGAGGTTGCTAATTGATAATGAAGATGCCATGGAGTTGAAACTTACATGGGAAGAAGCACAGGATTTGCTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTAATCGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACCATATTCAGTGCCTGTTCATCTGGGGGGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTGCCTGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTGTGAAAATGTTTGGGATTCAAGCAGGTGTTCATGCTCTGCGCCAGAGGAGTTAAGTTCAAGGGAAATAGAAAATCTTCTGAAAAACAACAAAGATTTTAAGAAGCGGCGAATCGTAGAAAGCAGCAAGTCAATCCAAGAACATGAGCCTTCTGGTCTTGATGCTCTTGCCAGTGCAGCAGTTCTTGGAGAAAATCTCATTGACACTGCCGAGTCATCAGCTGGAGTCACCACCAAACATCCTAGACACCGTCCTGGCTGCTCTTGCATCGTGTGCATTCAGCCACCAAGTGGAAAGGGGAGACATAAGCCGACATGTACATGCAACGTGTGCATGACCGTGAAGCGCCGGTTCAAAACTCTCATGCTAAGGAAGAAGAAACGGCAATCCGAACGTGAAGCAGATGCTGCCCAAAAAGATCAAACTCTTCCAAAAGACGAGCTGGATACCAATGGAGCATCGAGAGACGATACAAGTCAGTTGGAGAAAGAGGCTGGACTAAAAAGTCAACATGAGGTGGGTGGGTCCAGTGCTGGACAGATAGATCTGAATTCTCATCCCAACCGCGAAGACATGCAAGTGGAAACCACTGGACTTAACATGTCTAGTCATCTTGAACCTGCAACAAACCATACAGTAGGGGAATTTATGAACCAAAATGGCCTAAGAAACTTTAATAATGAAGTGCAAACTGGTCAGAATTCTTCTTTGCACACTCCTAAATCTAATGGAGAAGGTCAGAGATACTTCTCTGATGGAAGATGCTTTGCATCCATTATGTGGAACCAGGAAAGAAAAGATGAGGTACACAGTCAAACCAATCAAAGTCAAAACAATCTTTCTTAA 2727 0.4342 MGSNICVVNGSCTHEWRKGWPLRSGGFAQLCCKCGFMEEWKGDILDPLSAYENSVFCNKFHCQQTGWRECNFCNKPIHCGCIVSRSLFEYLDFGGIGCVSCVNTTQLSMMRNMENPNVTVLSIKNNAGDRHSAHFDGRLPVGGVDEGKLMQFCKIIEASESSRWNHAQRDGIIAHRGQKNQEAKSSFREVEIGFSNVMNPSVQSLTFATLENNRSTWEIKNMHESNTKPSLSMYLGNASGNNSVPPSAGEAVEGRLDGKTSPPFQGSRSIFPKPLKNGLTMNMETNKGTMSQSRVARPPADGRGKNQLLPRYWPRITDEELERLAGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLCAGDTVTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNSAKGTVSSGTENLPSGSNNADLLHSLTGNVECHLNGHTEHLHLGTGTAGLLKTENNEMTNSSSPQQQISVLEKKRTRNIGPKSKRLLIDNEDAMELKLTWEEAQDLLRPPPSVKPSIVTIEDQVIEEYDEPPVFGKRTIFSACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWTCCENVWDSSRCSCSAPEELSSREIENLLKNNKDFKKRRIVESSKSIQEHEPSGLDALASAAVLGENLIDTAESSAGVTTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAQKDQTLPKDELDTNGASRDDTSQLEKEAGLKSQHEVGGSSAGQIDLNSHPNREDMQVETTGLNMSSHLEPATNHTVGEFMNQNGLRNFNNEVQTGQNSSLHTPKSNGEGQRYFSDGRCFASIMWNQERKDEVHSQTNQSQNNLS 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00486 908 CDD B3_DNA 334 435 IPR003340 GO:0003677
Gma18g00486 908 Gene3D - 314 441 IPR015300 -
Gma18g00486 908 MobiDBLite consensus disorder prediction 750 814 - -
Gma18g00486 908 MobiDBLite consensus disorder prediction 438 471 - -
Gma18g00486 908 MobiDBLite consensus disorder prediction 853 877 - -
Gma18g00486 908 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 859 - -
Gma18g00486 908 ProSiteProfiles Zinc finger CW-type profile. 597 647 IPR011124 GO:0008270
Gma18g00486 908 MobiDBLite consensus disorder prediction 279 293 - -
Gma18g00486 908 SMART B3_2 336 437 IPR003340 GO:0003677
Gma18g00486 908 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Gma18g00486 908 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Gma18g00486 908 MobiDBLite consensus disorder prediction 241 308 - -
Gma18g00486 908 MobiDBLite consensus disorder prediction 800 814 - -
Gma18g00486 908 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 859 - -
Gma18g00486 908 MobiDBLite consensus disorder prediction 853 873 - -
Gma18g00486 908 Pfam CW-type Zinc Finger 602 644 IPR011124 GO:0008270
Gma18g00486 908 SUPERFAMILY DNA-binding pseudobarrel domain 334 436 IPR015300 -
Gma18g00486 908 Gene3D - 600 655 - -
Gma18g00486 908 MobiDBLite consensus disorder prediction 753 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00486 Gma-Chr18 4546098 4554180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00486 1 821 B3 DNA Binding Superfamily AT2G30470 50.060 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma18g00486 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00486 - - gmx:100789147 1829.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00486 18 4546098 4554180 Gma18g00486 18 4546098 4554180 ECH
Gma18g00486 18 4546098 4554180 Gma11g02020 11 33799023 33807474 GST
Gma18g00486 18 4546098 4554180 Gma14g02006 14 51013161 51020464 PCT
Gma18g00486 18 4546098 4554180 Gma02g02230 02 48299820 48307488 PCT
Gma14g02006 14 51013161 51020464 Gma18g00486 18 4546098 4554180 PCT
Gma02g02230 02 48299820 48307488 Gma18g00486 18 4546098 4554180 PCT