Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00483 ATGAATGAACTCGAGACAATCTTCAACCGCTTCGACGCCAATGACGACGGCAAGATCTCTGTCGACGAGCTCGACAGCGTGCTCCGATTGATTTTCAATACGAACTCGAACCAAACAGTGGTTCAAACATACGACAAGATGACCTACCTGAATTGCATCGCTGATTATTCCGACAATGGAACCTTCGTGTACAACGGCGAAAGCCGTGGTTTCGGCGAAGCATTGGTCGTCGTTGTTCCGTTGACCATAGTTGGACCGAACTACTTCTTCTTCGACGCCGACAACGGTGTGCAGTGCCAACACAACTTGGCCTTTGAGATCGACGTCCAGCACGGCCTCGGCTTGCCGCCAAGTCTCAACCAGCCGCCTCTGCCGTCGTACTAG 384 0.5234 MNELETIFNRFDANDDGKISVDELDSVLRLIFNTNSNQTVVQTYDKMTYLNCIADYSDNGTFVYNGESRGFGEALVVVVPLTIVGPNYFFFDADNGVQCQHNLAFEIDVQHGLGLPPSLNQPPLPSY 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00483 127 SMART efh_1 3 31 IPR002048 GO:0005509
Gma18g00483 127 Pfam Plastocyanin-like domain 30 100 IPR003245 GO:0009055
Gma18g00483 127 Gene3D - 1 38 - -
Gma18g00483 127 Pfam EF hand 5 26 IPR002048 GO:0005509
Gma18g00483 127 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Gma18g00483 127 ProSitePatterns EF-hand calcium-binding domain. 12 24 IPR018247 -
Gma18g00483 127 PANTHER OS12G0454600 PROTEIN 31 117 - -
Gma18g00483 127 PANTHER BLUE COPPER PROTEIN 31 117 IPR039391 GO:0009055
Gma18g00483 127 SUPERFAMILY EF-hand 3 44 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00483 Gma-Chr18 4512369 4512816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00483 30 118 Phytocyanin Superfamily AT1G08500 43.478 9.66e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00483 - - ccaj:109802964 138.272