Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00482 ATGTCGTATGTGCCTCCGCACCTCAGAAACGCCACCTCCACCTCCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTTGACAACAACAACAACAACCACCACCACCACCACAAGCTCGCATTCCCCTCCAACACCACCACCACCACCAATTGCTCTCCCTCTCTCTCCTTCCACAACAATGCCTCTCGCCGGAGCTCCGCCGCGCCTCCCTCGCCGCGGATTCTTGCCACCCCCGACGCCGTCTTCCCCCAATGGCAACCCTCCGAACGCGTTTCTCGCATGACTCCCGAGCAGATTGAAGAAATCCGATCCAGGCTTAATCTTGATGTTGCTGTCGCATCTGACTCTCCTCCTGCACCTGCGCCTGCTCCAATAGAATCGTTTACTGATATGTGTTTGCATCCGAGTATCATGAAGGACATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGCGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCCTGGCCCAACCTCCAATTCGGCGCAATGATGGTCCCCTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTCGAGTCATTAAAAACTGCCATAGTTGTGGGCGGAACTAACATTGAAAAGCAGAGGTTTGAACTAAGAGCGGGAGTTGAAATAGCTGTGGCCACCCCTGGAAGATTCATTGATCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTGGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGGGAGGTAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTGGAGATTGAAGAATTATCAAAGGAGTACTTGGCTAACCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATTTCTGAAAATGAGAAGATTGATCGGCTTCTAGATTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGTGATGAAGTTGCTGAAGCGTTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAAGCTGCCTTGCATGATTTTCGGAGTGGCACCACCAACATTTTGGTTGCCACTGATGTCGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCGGGATCAACTGGCTTAGCTACTTCATTTTACACcgatcgtgacatgTTCCTCATGGCAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAACACACTGACATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAACATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATGAACATTGAAGATAAATATAAATTCATGATTACTGCCACAAACACTAAAAGAGAGGGAGCAGCAGATAGTGCCTGGGATGATTAA 1716 0.4685 MSYVPPHLRNATSTSVATARTPSVTLDNNNNNHHHHHKLAFPSNTTTTTNCSPSLSFHNNASRRSSAAPPSPRILATPDAVFPQWQPSERVSRMTPEQIEEIRSRLNLDVAVASDSPPAPAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRFELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEELSKEYLANPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLMANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASMNIEDKYKFMITATNTKREGAADSAWDD 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00482 571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 357 515 IPR001650 -
Gma18g00482 571 Pfam DEAD/DEAH box helicase 150 321 IPR011545 GO:0003676|GO:0005524
Gma18g00482 571 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 536 - -
Gma18g00482 571 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 22 536 - -
Gma18g00482 571 Gene3D - 339 533 IPR027417 -
Gma18g00482 571 SMART ultradead3 145 348 IPR014001 -
Gma18g00482 571 MobiDBLite consensus disorder prediction 1 77 - -
Gma18g00482 571 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 154 IPR014014 GO:0003724
Gma18g00482 571 Coils Coil 212 232 - -
Gma18g00482 571 Gene3D - 84 337 IPR027417 -
Gma18g00482 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 494 IPR027417 -
Gma18g00482 571 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 279 287 IPR000629 -
Gma18g00482 571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 333 IPR014001 -
Gma18g00482 571 SMART helicmild6 393 474 IPR001650 -
Gma18g00482 571 MobiDBLite consensus disorder prediction 41 67 - -
Gma18g00482 571 CDD DEADc 137 334 - -
Gma18g00482 571 Pfam Helicase conserved C-terminal domain 357 474 IPR001650 -
Gma18g00482 571 Coils Coil 515 535 - -
Gma18g00482 571 MobiDBLite consensus disorder prediction 1 29 - -
Gma18g00482 571 CDD SF2_C_DEAD 345 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00482 Gma-Chr18 4501945 4511372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00482 126 496 Eukaryotic Initiation Factors Gene Family AT1G72730 35.733 5.18e-71 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00482 K12823 - gmx:100787545 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00482 18 4501945 4511372 Gma18g00482 18 4501945 4511372 ECH
Gma18g00482 18 4501945 4511372 Gma11g02028 11 34041844 34053504 GST