Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00480 ATGAGTGACACACACCAAACTTTCATGTCCGTACAACCACCCCTGAATCTCCACCACCCCTTTAACCCACAAGCCTCAAGCTCAAATTTTGACGGCGACCCACCATGCAAAACCGCCGCAAAAACCAAACCTCCGCGCAAGAAGCTACTCCGGGTAATTCTCACCGACCATGACGCCACCGATTCTGACTCCTCCGGTGACGACGACGACCCAAAAAACCCACCGAAACACAAAAAGGTGAAAAGACAAATCACCCACATCACCATAAACCTTCCCTCTTTCTCAGAAGCCCCAACTCCAGCACCAATACCAACACCTTCTTCGTCTTCTTCTATTGATCCGACCCGTTTAACCCTACCCAAGAAACGACCCGCCGTGCCTCGCCGCCGTAGCAAGTTCCGCGGGGTCCGGCAGCGGCCATGGGGACGGTGGACCGCAGAAATCCGTGACCCGAATCAGAGAAAACGGGTCTGGCTCGGAACGTTCGACACGGCGGAGGAAGCCGCCGCCGTGTACGACGACGCCGCCTTGAAGCTCAAGGGCCCCAACGCCGTCACTAACTTCCCCCTCTCCGCCGCCGGAAAAACGGAACATGATACCGCGCCGCCGGAGGCGGCTTTCTCCGGCGAAGGTTTTTCATCTCCCACTTCCGTTCTCACTTACTTTGACGGAGACTCGACGCCACTTTACGGTTTCCGTTACGGCGAGGTCGACGCGTTCGGGTTTGACATCGATGCGCCGTTTAGTTTGACAGACGTTAACTTAGGGGTGCTGAGTCAGCGGTTCGGGAAGGAAGATTTCGGCGAGTTTGACCCGGACGAGTTCTTGACGTGGCCGAGTTAA 843 0.5623 MSDTHQTFMSVQPPLNLHHPFNPQASSSNFDGDPPCKTAAKTKPPRKKLLRVILTDHDATDSDSSGDDDDPKNPPKHKKVKRQITHITINLPSFSEAPTPAPIPTPSSSSSIDPTRLTLPKKRPAVPRRRSKFRGVRQRPWGRWTAEIRDPNQRKRVWLGTFDTAEEAAAVYDDAALKLKGPNAVTNFPLSAAGKTEHDTAPPEAAFSGEGFSSPTSVLTYFDGDSTPLYGFRYGEVDAFGFDIDAPFSLTDVNLGVLSQRFGKEDFGEFDPDEFLTWPS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00480 280 SMART rav1_2 132 195 IPR001471 GO:0003700|GO:0006355
Gma18g00480 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 44 222 - -
Gma18g00480 280 MobiDBLite consensus disorder prediction 122 137 - -
Gma18g00480 280 MobiDBLite consensus disorder prediction 1 138 - -
Gma18g00480 280 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Gma18g00480 280 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Gma18g00480 280 MobiDBLite consensus disorder prediction 1 33 - -
Gma18g00480 280 MobiDBLite consensus disorder prediction 49 76 - -
Gma18g00480 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 44 222 - -
Gma18g00480 280 Gene3D AP2/ERF domain 131 191 IPR036955 GO:0003700|GO:0006355
Gma18g00480 280 ProSiteProfiles AP2/ERF domain profile. 132 189 IPR001471 GO:0003700|GO:0006355
Gma18g00480 280 CDD AP2 131 191 IPR001471 GO:0003700|GO:0006355
Gma18g00480 280 PIRSF PTI6 23 280 IPR017392 GO:0003700
Gma18g00480 280 Pfam AP2 domain 131 181 IPR001471 GO:0003700|GO:0006355
Gma18g00480 280 SUPERFAMILY DNA-binding domain 131 191 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00480 Gma-Chr18 4480588 4481660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00480 48 221 AP2-EREBP Transcription Factor Family AT4G27950 42.781 1.53e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma18g00480 AP2 6.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00480 K13434 - gmx:102660028 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00480 18 4480588 4481660 Gma18g00480 18 4480588 4481660 ECH
Gma18g00480 18 4480588 4481660 Gma11g02030 11 34089788 34091311 GST
Gma18g00480 18 4480588 4481660 Gma14g02014 14 51158193 51160033 PCT
Gma18g00480 18 4480588 4481660 Gma02g02234 02 48391737 48392585 PCT
Gma14g02014 14 51158193 51160033 Gma18g00480 18 4480588 4481660 PCT
Gma02g02234 02 48391737 48392585 Gma18g00480 18 4480588 4481660 PCT