Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00472 ATGACGCATGCTCATACGCACACAATCAAACACAAAGCGTGTGCCTCCAAAGGGTATAAAAGCACCACCACCTTCTCCCTTCTCCATCTTCAAGCGTTCTACTATTTCGTCAATTCCAACAACACCACAATGGGAAGAAGACCGGCGAGGTGTTACCGGCAGATAAAGAACAAACCGTACCCGAAATCCCGTTTCTGCCGCGGCGTGCCGGAGCCGAAGATCCGAATCTACGACGTGGGAATGAAGAAGAAAGGCGTGGACGAGTTCCCGTTCTGCGTGCACCTGGTCTCGTGGGAGAAGGAGAACGTCTCCAGCGAGGCTTTGGAGGCGGCGCGCATCGCATGCAACAAGTACATGGCCAAGTTCGCCGGAAAAGATGCCTTCCACCTGCGCGTGAGGGTGCATCCCTTCCACGTGCTCCGCATCAACAAGATGCTATCGTGCGCCGGGGCCGACAGGCTCCAGACCGGCATGAGGGGCGCCTTTGGGAAGCCGCAGGGGACGTGCGCTAGGGTTAACATTGGTCAGGTGCTGCTCTCGGTGAGGTGTAAGGATGCTAACAGTCACCATGCTCAGGAGGCTCTTCGTAGGGCCAAGTTCAAGTTCCCCGGCCGCCAGAAGATCATTCTTAGCAGAAAATGGGGATTTACAAAGTTCAGTCGAAGTGAGTATTTGAAGTTGAAGTCTGAGAACAGAATTGTGCCGGATGGGGTCAATGCCAAGGTTCTTGGGTGTCACGGACCTTTGGCAAATCGTGAGCCTGGAAGAGCTTTCTTACCAGCTACTGCTTAG 792 0.5429 MTHAHTHTIKHKACASKGYKSTTTFSLLHLQAFYYFVNSNNTTMGRRPARCYRQIKNKPYPKSRFCRGVPEPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDANSHHAQEALRRAKFKFPGRQKIILSRKWGFTKFSRSEYLKLKSENRIVPDGVNAKVLGCHGPLANREPGRAFLPATA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00472 263 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 44 262 - -
Gma18g00472 263 Pfam Ribosomal protein L16p/L10e 55 209 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gma18g00472 263 TIGRFAM uL16_euk_arch: ribosomal protein uL16 44 217 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gma18g00472 263 ProSitePatterns Ribosomal protein L10e signature. 151 172 IPR018255 GO:0003735|GO:0005840|GO:0006412
Gma18g00472 263 Gene3D Ribosomal protein L10e/L16 44 258 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gma18g00472 263 SUPERFAMILY Ribosomal protein L16p/L10e 47 216 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gma18g00472 263 CDD Ribosomal_L16_L10e 84 209 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gma18g00472 263 PANTHER 60S RIBOSOMAL PROTEIN L10 44 262 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00472 Gma-Chr18 4403822 4405504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00472 44 263 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.364 1.34e-143 400
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00472 18 4403822 4405504 Gma18g00472 18 4403822 4405504 ECH