Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00436 ATGAAGCTTTCAACATCAGGGTTGGGGCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGCCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCTAGCTTGCCACCCCAGTTGATTTGCCAACTTCATAATGTCACAATGCATGCAGATGTTGAAACGGATGAAGTATATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTTCTATGGAATTGGGCATTCCAAGTAAGCAGCCGTCAAATTATTTTTGCAAGACATTAACGGCCAGTGACACCAGCACGCATGGGGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCACTGGTAGGTTTCATATTTTGCCAGTGTTTGACTCTGGTTGGGTATAGATGCATTATCTTATATCTGCATGCTATACAGGATTTCTCGCTGCAACCACCAGCACAGGAACTAATTGCTAGGGATCTCCATGATGCTGAATGGAAATTTCGACATATTTTTCGAGGTAgacagccaaaacgacaccttcttactacaggctggagtatatttgttagtgccaagagacttgtggctggagatTCTGTGCTTTTCATATGGAATGAGAAGAACCAGCTCCTTTTGGGAATACGTCGTGCCAATAGACCGCAAACTGTAATGCCGTCATCAGTTCTATCCAGTGATAGCATGCATATTGGACTTCTTGCAGCTGCTGCCCATGCTGCCGCAACCAATAGCTGTTTTACTGTGTTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCAAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCGATGTATCCATCATTATTTCCCCTCAGACTGAAACGTCCATGGCATCCTGGCACCTCATCTTTGCATGATGGGAGAGATGAAGCTACTAATGGGCTAATGTGGATGAGAGGTGGACCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTACAGAACTTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAGCAGCCTTACCACTATCTTCAACAATCTGGAAACAGTAATTCTCCTTTGCAACTTCAGCAGCAGCAACCAATTCAACAATCTGTGTCTTCTAACATGCTGCAGCCACAAGCTCACGTGTTGACAGAGAACCTCTCTCAGCACCTCCTTCAGAAACCACATAACAATCAAGAAGTCCAAGCACAACAGCAGCAACATACTTATCAAGACTCGCTCTTAATTCCGAGTGATCAACTCCATCAGAGACAACACTCTGGCATTCCTTCACCATCATATTCAAAACCGGATTTCTTGGATTCGAGCATGAAGTTCCCTGCTTCAGTTTCTCCCGGGCAAAACATGCTTAGTTCACTTTGTCCTGAAGGAAGTGGCAGTCTCTTGAATTTATCGAGGAGCAGTCTGTCCTTGCTGACTGAACAGTTACCGCAACAGCAATGGACTCAAAAATATGCACCTGTGCAGGTCAACACCTATGGAGGCACTGTGTCACATGCACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATTGTAACTCGGATGCCCAAAATTCTACGCTTTTTGGTGTCAATATTGATTCATCTGGCCTTCTCCCCATCACAGTCCCTGGTTACACCACCTCGTCTGCTGACACTAATTCATCAACAATGCCATTAGCGGATTCTGGTTTCCAGGGTTCTCTATATGGTTGCATGGATTCATCGGAGTTGTTGCAAAGCGCAGGGCATGTTGACCCAGAAAACCAGAGTCAAACCTTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTTGACATATCCAGGTTCAGCAGCTATCATGAACTACGCGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAATGATGTTCTTCTCCTTGGAGATGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCGGTAGAATCCCTTGCATTAGGTTCAGGACAAAGGCTAAATGGCACTGGTGCCGAGTCTCAGGACATAGTTTCTGGACCACCATCAATTGGCTCACTTGAGTACTGA 2604 0.4401 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLSMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLVGFIFCQCLTLVGYRCIILYLHAIQDFSLQPPAQELIARDLHDAEWKFRHIFRGRQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLHDGRDEATNGLMWMRGGPVDQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPYHYLQQSGNSNSPLQLQQQQPIQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHTYQDSLLIPSDQLHQRQHSGIPSPSYSKPDFLDSSMKFPASVSPGQNMLSSLCPEGSGSLLNLSRSSLSLLTEQLPQQQWTQKYAPVQVNTYGGTVSHAQYSGKDSAMVLPHCNSDAQNSTLFGVNIDSSGLLPITVPGYTTSSADTNSSTMPLADSGFQGSLYGCMDSSELLQSAGHVDPENQSQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00436 867 ProSiteProfiles B3 DNA-binding domain profile. 192 256 IPR003340 GO:0003677
Gma18g00436 867 MobiDBLite consensus disorder prediction 845 859 - -
Gma18g00436 867 CDD B3_DNA 127 254 IPR003340 GO:0003677
Gma18g00436 867 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma18g00436 867 Pfam B3 DNA binding domain 128 255 IPR003340 GO:0003677
Gma18g00436 867 MobiDBLite consensus disorder prediction 845 867 - -
Gma18g00436 867 Pfam AUX/IAA family 738 825 IPR033389 -
Gma18g00436 867 SUPERFAMILY DNA-binding pseudobarrel domain 179 283 IPR015300 -
Gma18g00436 867 Gene3D - 126 255 IPR015300 -
Gma18g00436 867 SUPERFAMILY DNA-binding pseudobarrel domain 113 159 IPR015300 -
Gma18g00436 867 Gene3D - 737 830 - -
Gma18g00436 867 Gene3D - 318 390 - -
Gma18g00436 867 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 157 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma18g00436 867 ProSiteProfiles PB1 domain profile. 741 825 IPR000270 GO:0005515
Gma18g00436 867 PANTHER AUXIN RESPONSE FACTOR 182 852 - -
Gma18g00436 867 SMART B3_2 128 256 IPR003340 GO:0003677
Gma18g00436 867 PANTHER AUXIN RESPONSE FACTOR 1 157 - -
Gma18g00436 867 SUPERFAMILY CAD & PB1 domains 737 815 - -
Gma18g00436 867 MobiDBLite consensus disorder prediction 496 520 - -
Gma18g00436 867 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 182 852 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00436 Gma-Chr18 4138607 4145527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00436 98 839 B3 DNA Binding Superfamily AT5G37020 65.206 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma18g00436 B3 2.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00436 - - gmx:100814479 1625.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00436 18 4138607 4145527 Gma11g02076 11 34761811 34768509 GST
Gma18g00436 18 4138607 4145527 Gma14g02038 14 51498662 51505927 PCT
Gma18g00436 18 4138607 4145527 Gma02g02264 02 48725969 48736520 PCT
Gma14g02038 14 51498662 51505927 Gma18g00436 18 4138607 4145527 PCT
Gma02g02264 02 48725969 48736520 Gma18g00436 18 4138607 4145527 PCT