Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00419 ATGGGTTCTTGGGCTACATCATCTGTTCTGGCTAATCAATTTATTCCATGGTCTACAACCAATTCTGAATCTGCCATCGACTCCAAATTGGGTGTCGTTTTTTACAAAATGTACAGAAATACAAACAAAAGACAACTCAGTCTCGCTTTTGCTTGGGATAATTGTAAAGTTAGAAGTATTGGTGCAATTAAATCATACAAAGATGTATCTTATTTTCAAACTGAACTAGTAGGAACTTGGGAAGAACCCGATACTGGAAGTGACAGTGAGGGTGATGATGAAGAATATGAGGAAGTTGAAGATGAGAATTTTGGATTTGAAAGTGGTTCAGGAGAGGAAGGGATGAAGACTTCAGTTGTTACTGATGTTAATATAACTTCAGGGGACAACTATGAAGAACTTATTAAGAAAGAGATTGAACAGCTTTTGGAACCGGGAGAAAGAGCAATATTGAAACAGAATGTTACTCCTAACTTGGAAAAAATATCAACCGCAAAATGGAGCCCGCTGCACACTCTTGTGCTATCAATGCAGATGAGTTGTGTGGATAAGCTTCTTGAAAATGGTGTTGATATTGATTTACCTGATAAGGAAGGTCTTACTGCACTTCATAAGGCAATTATAGGTAAAAAAGAAGCAGTGATTAGCCATCTTTTACGAAGAGGTGCAAGTCCTCATGTTATGGATAAGGATGGAGCCACTCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGATGACTGTGAAATTATTGATCAAGTACAAGGTTGATGTCAATGTTGAAGATAATGAAGGTTGGACCCCCTTGCACGTTGCCATTCAAAGCAGAAATAGAGATATAGCAAAAATATTGTTAGTCAATGGTGCTGATAAGACTAGGAAAAATAAGGACGGAAAAACAGCCCTAGATCTAAGCTTATGTTATGGGAAAGATTTCAAGTCTTATGACCTTGCCAAATTACTGAAGACGGTTCCAGCTGACAGTGATCTATTCTGA 996 0.3805 MGSWATSSVLANQFIPWSTTNSESAIDSKLGVVFYKMYRNTNKRQLSLAFAWDNCKVRSIGAIKSYKDVSYFQTELVGTWEEPDTGSDSEGDDEEYEEVEDENFGFESGSGEEGMKTSVVTDVNITSGDNYEELIKKEIEQLLEPGERAILKQNVTPNLEKISTAKWSPLHTLVLSMQMSCVDKLLENGVDIDLPDKEGLTALHKAIIGKKEAVISHLLRRGASPHVMDKDGATPLHYAVQVGAKMTVKLLIKYKVDVNVEDNEGWTPLHVAIQSRNRDIAKILLVNGADKTRKNKDGKTALDLSLCYGKDFKSYDLAKLLKTVPADSDLF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00419 331 Pfam Ankyrin repeats (3 copies) 215 295 IPR002110 GO:0005515
Gma18g00419 331 ProSiteProfiles Ankyrin repeat region circular profile. 264 290 - -
Gma18g00419 331 SUPERFAMILY Ankyrin repeat 157 321 IPR036770 -
Gma18g00419 331 ProSiteProfiles Ankyrin repeat region circular profile. 198 230 - -
Gma18g00419 331 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 103 323 - -
Gma18g00419 331 Pfam Ankyrin repeats (many copies) 167 214 IPR002110 GO:0005515
Gma18g00419 331 Gene3D - 233 313 IPR036770 -
Gma18g00419 331 ProSiteProfiles Ankyrin repeat profile. 264 296 IPR002110 GO:0005515
Gma18g00419 331 ProSiteProfiles Ankyrin repeat profile. 165 197 IPR002110 GO:0005515
Gma18g00419 331 ProSiteProfiles Ankyrin repeat region circular profile. 231 263 - -
Gma18g00419 331 ProSiteProfiles Ankyrin repeat profile. 198 230 IPR002110 GO:0005515
Gma18g00419 331 Gene3D - 132 232 IPR036770 -
Gma18g00419 331 ProSiteProfiles Ankyrin repeat profile. 231 263 IPR002110 GO:0005515
Gma18g00419 331 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 103 323 - -
Gma18g00419 331 SMART ANK_2a 231 260 IPR002110 GO:0005515
Gma18g00419 331 SMART ANK_2a 165 194 IPR002110 GO:0005515
Gma18g00419 331 SMART ANK_2a 297 330 IPR002110 GO:0005515
Gma18g00419 331 SMART ANK_2a 264 293 IPR002110 GO:0005515
Gma18g00419 331 SMART ANK_2a 198 227 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00419 Gma-Chr18 3854828 3857281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00419 150 290 Ion Channels AT2G25600 31.690 3.40e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00419 - - gmx:100818556 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00419 18 3854828 3857281 Gma11g02146 11 36493182 36497948 GST