Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00417 ATGTCACAACAAACACTAACCATTCTTCTATTCACACTCCTCAGTCTTACTTCTTCACCAGCCACTTGCTTATACTCTTCTCCATCACCCCCTACCGCGCCATTTTCCGAATCTACCCCCCACACCGACCCTGAACCACGCGCCGAAGAATGGTTACCCGCCCACGCAACTCACTACGCCGCCACCGACGCGGTCGGCGGCGCGTGTGGTTACGGCGACCTCCTTAACGGCGGTTATGGCATGGCCACCGCCGCTCTCAGCGAAGCTCTCTTCGGGCGCGGCCAGATCTGCGGCGCCTGCTTCGAGGTCCGGTGCCGCGAGGAGGATTCCGACTTCGACCGGCGGTGGTGCATCTCCGGCACGACGGTCGCCGTCACCGCCACCAATTTCTGCGCCCCGAACTACGGTTCCGACGCGGAGAGCGTCGCCGGACACTGCAACCCTCCGAAGCAGCACTTGGTTCTCCCCATTGAAGCGTTCGAGAAAATCGCAATCTGGAAAACTGGCACTGGCAACATGCCCGTGGAGTATCGCAGGATAAAGTGTGCAAGGGAAGGGGGAATCCGGTTTACAATTACTGGTTCTGGAATATTCATTTCGGTACTGATTAGTAATGTGGCTGGAATTGGAGACATTGCTGCTGTGAAGGTTAAGGGTTCAAGAACTGGTTGGCTTCCAATGGGTAGGAATTGGGGTCAGAATTGGCATATTAATGCATTGCTACAGAACCAACCTCTTTCCTTTGAGGTTACAAGTAGTGATGGGATAACTCTTACATCTTACAATGTTGCTCCCAAGGATTGGAGCTTTGGACAATCTTTTGAAGGCAAGCAATTTGAGTCTTGA 846 0.5378 MSQQTLTILLFTLLSLTSSPATCLYSSPSPPTAPFSESTPHTDPEPRAEEWLPAHATHYAATDAVGGACGYGDLLNGGYGMATAALSEALFGRGQICGACFEVRCREEDSDFDRRWCISGTTVAVTATNFCAPNYGSDAESVAGHCNPPKQHLVLPIEAFEKIAIWKTGTGNMPVEYRRIKCAREGGIRFTITGSGIFISVLISNVAGIGDIAAVKVKGSRTGWLPMGRNWGQNWHINALLQNQPLSFEVTSSDGITLTSYNVAPKDWSFGQSFEGKQFES 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00417 281 PANTHER EXPANSIN-A13 33 280 - -
Gma18g00417 281 MobiDBLite consensus disorder prediction 25 39 - -
Gma18g00417 281 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 197 276 IPR007117 -
Gma18g00417 281 Pfam Lytic transglycolase 83 177 IPR009009 -
Gma18g00417 281 PRINTS Expansin signature 78 92 IPR002963 GO:0009664
Gma18g00417 281 PRINTS Expansin signature 143 160 IPR002963 GO:0009664
Gma18g00417 281 PRINTS Expansin signature 186 198 IPR002963 GO:0009664
Gma18g00417 281 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Gma18g00417 281 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Gma18g00417 281 PRINTS Expansin signature 262 278 IPR002963 GO:0009664
Gma18g00417 281 SUPERFAMILY Barwin-like endoglucanases 50 205 IPR036908 -
Gma18g00417 281 SMART dpbb_1 83 177 IPR007112 -
Gma18g00417 281 PRINTS Expansin/Lol pI family signature 50 65 IPR007118 GO:0005576
Gma18g00417 281 PRINTS Expansin/Lol pI family signature 170 186 IPR007118 GO:0005576
Gma18g00417 281 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Gma18g00417 281 PRINTS Expansin/Lol pI family signature 262 276 IPR007118 GO:0005576
Gma18g00417 281 MobiDBLite consensus disorder prediction 25 47 - -
Gma18g00417 281 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 187 IPR007112 -
Gma18g00417 281 Gene3D - 37 183 IPR036908 -
Gma18g00417 281 PANTHER EXPANSIN-A15 33 280 IPR002963 GO:0009664
Gma18g00417 281 Pfam Expansin C-terminal domain 188 265 IPR007117 -
Gma18g00417 281 Gene3D - 187 279 IPR036749 -
Gma18g00417 281 SUPERFAMILY PHL pollen allergen 184 276 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00417 Gma-Chr18 3842939 3845947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00417 50 281 Expansin Gene Family AT3G03220 73.191 9.49e-125 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00417 - - gmx:100790211 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00417 18 3842939 3845947 Gma11g02149 11 36515961 36516539 GST
Gma18g00417 18 3842939 3845947 Gma14g02053 14 51637689 51639958 PCT
Gma18g00417 18 3842939 3845947 Gma02g02277 02 48837601 48839332 PCT
Gma14g02053 14 51637689 51639958 Gma18g00417 18 3842939 3845947 PCT
Gma02g02277 02 48837601 48839332 Gma18g00417 18 3842939 3845947 PCT