Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00397 ATGGTTTTGTCTTGGTCAAGAAGGAACGTTTTCCGCCGTGCCAAGAAGGAGAAGTCACAAACTCAATTGGAAGTGGAGGTTGTGATTCCCAACCACTTTCACTGCCCGGTGAGTCTGGAGCTGATGACAGACCCAGTGACTTTATCAACCGGCATCACCTACGACCGTGTGAGCATTGAGAAGTGGATCGAGGGAGGGAACAGAACCTGCCCCGTCACCAACCAGGTGCTGACAACCTTCGACATCATCCCCAACCACGCCATTCGCAGGATGATTCAGGATTGGTGTGTCGAAAATAGTTCTTATGGGATTGATAGAATCCCCACACCTCGTATTCCTATCTCGGCATACGAGGTTTCCGACACGTGTACCAGGATCTTGTCGGCTTGCCAGCGTGGAGATGACAAGAGGTGTCAGGAGTTGGTCGGGAAGATTAAGGTTTGGAGTAGAGAGAGTGAGAGGAACAAGAGGTGCATAGTTGGTGCTGGTGCTGGTGCTGTTCTTGCATATGCCTTTGATTGTTTCTCAAGTAACTCTATTGAAAAACATGTGGTGCTTTTGGAGGAGGTTTTGGAGGTGATGACATGGATGGTCCCACTTGGGGAAGAGGGTGTTTCTAAATTGAGTTCAGGAGCTTCTTTGAATTCGTTGGTATGGTTTCTAGAGGGGAAAGACCTTGCATCAAGGCAAAGTGCTGCTTTGTTGCTTAAAGAAGTGTGTGTTCAAGAATTGGCCAAGGTTGGAGAAGTTGTTGAAGCTTTGGTTAAGATGGTTAGGGAGCCTATTGGGAGCACTTCCACCAAGGCTTGTTTGGCAACAATTTTTAACTTGGTGTCGTTGGCTGCGAATAGAGAGGGAATTGCTCAAAGATTTGTGGAGTTGGGTTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGAGAAAGGGGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATTGCGAGAAGGGGAAGGAGGTTGTGAAGAGCAATGCTCTAGCCTTGCCTCTTGTTGTTAGGAAGCTTTTGAGGGTGTCACCATTGGCTTCAGGTTTTGCTGTGTCTATTCTTAGGAAGATTTGTGACAAGAGGGAGGAAGGGATTCTGATTGAGGCACTTCAAGTTGGGCTTTTTCAGAAGCTCTTGGTTCTGCTGCAGGTTGGGTGTGATGAGAGCACCAAGGAGAATGCTACCGGGTTGTTGAAACTGTTGAATGGTTACAGGAACAAAGCGGAGTGCACTGACTCATCATTGAATTTCGAGCATCTTAAGAAGCCATTTTAA 1296 0.4715 MVLSWSRRNVFRRAKKEKSQTQLEVEVVIPNHFHCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNRTCPVTNQVLTTFDIIPNHAIRRMIQDWCVENSSYGIDRIPTPRIPISAYEVSDTCTRILSACQRGDDKRCQELVGKIKVWSRESERNKRCIVGAGAGAVLAYAFDCFSSNSIEKHVVLLEEVLEVMTWMVPLGEEGVSKLSSGASLNSLVWFLEGKDLASRQSAALLLKEVCVQELAKVGEVVEALVKMVREPIGSTSTKACLATIFNLVSLAANREGIAQRFVELGLVSLLLEAIVDGEKGVCEKALGVLDCICDCEKGKEVVKSNALALPLVVRKLLRVSPLASGFAVSILRKICDKREEGILIEALQVGLFQKLLVLLQVGCDESTKENATGLLKLLNGYRNKAECTDSSLNFEHLKKPF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00397 431 SMART Ubox_2 32 95 IPR003613 GO:0004842|GO:0016567
Gma18g00397 431 Gene3D - 115 419 IPR011989 -
Gma18g00397 431 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 17 431 - -
Gma18g00397 431 SUPERFAMILY RING/U-box 20 105 - -
Gma18g00397 431 CDD RING-Ubox_PUB 33 75 IPR045210 -
Gma18g00397 431 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Gma18g00397 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 105 IPR013083 -
Gma18g00397 431 Pfam U-box domain 29 100 IPR003613 GO:0004842|GO:0016567
Gma18g00397 431 PANTHER WDSAM1 PROTEIN 17 431 IPR045185 GO:0061630
Gma18g00397 431 SUPERFAMILY ARM repeat 124 408 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00397 Gma-Chr18 3584669 3585964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00397 20 431 U-box Gene Family AT5G37490 46.778 9.90e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00397 - - gmx:548086 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00397 18 3584669 3585964 Gma18g00397 18 3584669 3585964 ECH
Gma18g00397 18 3584669 3585964 Gma11g02173 11 36834075 36835760 GST
Gma18g00397 18 3584669 3585964 Gma14g02069 14 51832569 51835573 PCT
Gma18g00397 18 3584669 3585964 Gma02g02298 02 49047249 49048634 PCT
Gma14g02069 14 51832569 51835573 Gma18g00397 18 3584669 3585964 PCT
Gma02g02298 02 49047249 49048634 Gma18g00397 18 3584669 3585964 PCT