Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00383 ATGGGAAGGCAACCTTGCTGTGACAAAGTGGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTCATCAATTTCATCCTCACTAATGGTCAATGTTGCTGGAGAGCTCTCCCTAAACTAGCAGGGCTGTTAAGATGTGGAAAAAGTTGCAGGCTCAGGTGGACAAATTACCTGAGGCCAGACCTGAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCTAAGATTGCTTCTCATCTCCCAGGAAGAACCGATAATGAGATCAAGAATCACTGGAATACCCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACTCACAAGCCACTTTCCAATAAAACTGAGGAAACTCAAGCCCAACCAGATGAACAAACCCATCAACCATTGCAAGaacaacaacaacaacaacatcaacatcaacaacaacCTATCCCAGTTGAGAAAGACCTCAAATTTGAACCTGAAAAGGAGCAAAACAGGGAGCCAGAGACTTCAGTTGAATCATCAACCATCACTGAAGAAGTTAAGGAGGAAGACCAAATCATGACACCCCTATTTGACTCATGGGAACTAATGAATGAGTTCTGCACTGATGAAGCTCCCATAATAGAACCAAATGAGATTCTAGTTCCTTCTGCTCCTTCTTCCGCTTCACCAACCACTACTACTATATCATCTTCAACATCAACATCCTCTTATTCAAATTCATCCAACTTCCTTGAAGACCTGCTGCTCCCAGATTTGGAGTGGTCTGATGATTACAATGATACTAATTTTGACAACAATAGCAGCATGGCCTTGTGGGATGATGACTTTATTGGAAGTTGGAATTCGCTTATTAATGGTGATGGTGATAGAAAGCAAGTGTTTGACGCTCCTATCAATCAGTACCCAAGTGTGATCATGGATTCAGATTCTTGGGACTATGGCTTGTTTTGA 996 0.4066 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRALPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSNKTEETQAQPDEQTHQPLQEQQQQQHQHQQQPIPVEKDLKFEPEKEQNREPETSVESSTITEEVKEEDQIMTPLFDSWELMNEFCTDEAPIIEPNEILVPSAPSSASPTTTTISSSTSTSSYSNSSNFLEDLLLPDLEWSDDYNDTNFDNNSSMALWDDDFIGSWNSLINGDGDRKQVFDAPINQYPSVIMDSDSWDYGLF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00383 331 PANTHER MYB TRANSCRIPTION FACTOR 1 306 - -
Gma18g00383 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma18g00383 331 MobiDBLite consensus disorder prediction 130 162 - -
Gma18g00383 331 CDD SANT 16 61 IPR001005 -
Gma18g00383 331 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 306 - -
Gma18g00383 331 MobiDBLite consensus disorder prediction 231 255 - -
Gma18g00383 331 MobiDBLite consensus disorder prediction 117 198 - -
Gma18g00383 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma18g00383 331 SMART sant 66 114 IPR001005 -
Gma18g00383 331 SMART sant 13 63 IPR001005 -
Gma18g00383 331 MobiDBLite consensus disorder prediction 163 182 - -
Gma18g00383 331 Gene3D - 71 116 - -
Gma18g00383 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma18g00383 331 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Gma18g00383 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma18g00383 331 CDD SANT 74 112 IPR001005 -
Gma18g00383 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma18g00383 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma18g00383 331 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00383 Gma-Chr18 3405955 3408495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00383 1 331 MYB Transcription Factor Family AT5G16600 48.634 2.28e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma18g00383 Myb_DNA-binding 9.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00383 K09422 - gmx:100794413 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00383 18 3405955 3408495 Gma11g02186 11 37039536 37042107 GST
Gma14g02089 14 52032755 52034908 Gma18g00383 18 3405955 3408495 PCT