Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00380 ATGGCTTCTTCCTTGGATATGTCGCTTGATGATAGAATAAAGAACAGAAGTAACAGAGGGAGAGGTAGAGGAGGACGTGGTAGAGCCCATTCTGGCCGTGGACCAAGTGGCGCTCttaatggtggaagaatggctggtgctgttagtagtagaagaatggctggtgctagtaatggtggaagaacaactggtgctgttCGTAGAGGTCCTCTTATGGTTAACACTCGGCCGTCATCGTATGCTATTGCCAAGGCAAGCTCAAAAAACTCTATTCGCAGAGCTAGGCCCTTTCCATGGCAGCATGATTTGTTTGAAGATAGCTTAAGAGCTGCTGGGATTCAAGGAGTAGAAGTTGGCACCAAGTTGTATGTTTCCAATTTGGACCATGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGTTTTGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTCGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATTCAGAATTGCCTATAAGTGCTCGGGTGAATGTCACTGGGGTGAATGGGCGCAGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGCCAAGCTGGAGGTGGTCCTACTATGCCTAATCGTGGTGCTGGTCGGGGACGTCGAGGTGGCCCAAGGAGTGGCAGTGGACGTGGTGGAGGTGGTGGTCGAGGCCGTGGTCGCGGCAGCAGGGGTGGTGGTGGAGGTAGAGGTCGTGGAAGAAAGGATGCTGTTGAGAAGTCAGCGGAGGAACTTGACAAGGAGCTGGAGACCTATCATGCTGAAGCCATGAACATCTCTTGA 912 0.4452 MASSLDMSLDDRIKNRSNRGRGRGGRGRAHSGRGPSGALNGGRMAGAVSSRRMAGASNGGRTTGAVRRGPLMVNTRPSSYAIAKASSKNSIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPISARVNVTGVNGRRKRTVVMTPRGGQAGGGPTMPNRGAGRGRRGGPRSGSGRGGGGGRGRGRGSRGGGGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00380 303 Coils Coil 278 298 - -
Gma18g00380 303 Gene3D - 115 197 IPR012677 -
Gma18g00380 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Gma18g00380 303 SUPERFAMILY RNA-binding domain, RBD 114 194 IPR035979 GO:0003676
Gma18g00380 303 MobiDBLite consensus disorder prediction 221 303 - -
Gma18g00380 303 PANTHER THO COMPLEX SUBUNIT 4C 1 302 - -
Gma18g00380 303 Pfam C-terminal duplication domain of Friend of PRMT1 238 297 IPR025715 -
Gma18g00380 303 MobiDBLite consensus disorder prediction 272 296 - -
Gma18g00380 303 SMART FoP_duplication_2 231 303 IPR025715 -
Gma18g00380 303 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 302 - -
Gma18g00380 303 MobiDBLite consensus disorder prediction 1 68 - -
Gma18g00380 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Gma18g00380 303 SMART rrm1_1 121 193 IPR000504 GO:0003723
Gma18g00380 303 CDD RRM_THOC4 120 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00380 Gma-Chr18 3361040 3365120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00380 119 194 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 3.03e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00380 K12881 - gmx:100801491 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00380 18 3361040 3365120 Gma11g02189 11 37084669 37088783 ECH
Gma18g00380 18 3361040 3365120 Gma18g00380 18 3361040 3365120 ECH
Gma18g00380 18 3361040 3365120 Gma11g02189 11 37084669 37088783 GST