Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00350 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCTGCAGCCAGTGGCATTCTTGGCCACACAGAATTGAGGTTGCATATGCCACCATCAATAGCTCTTGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCCTCTATGACGGAGGAAGAGATTAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCTCAATGTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGAGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGATGACCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCAGTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGTTGGAGTGACAATGGACATAATGATATCATCGCGGACATGGTCTGA 825 0.4558 MSFVFRGTRADIENGFPGFIPERRALRVHATRPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQCGGSSMQQASSSTPAEKKQDNSNAVGSMKASDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIIADMV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00350 274 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Gma18g00350 274 CDD RING-H2_PA-TM-RING 212 254 - -
Gma18g00350 274 MobiDBLite consensus disorder prediction 174 206 - -
Gma18g00350 274 Pfam Ring finger domain 212 254 IPR001841 -
Gma18g00350 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 259 IPR013083 -
Gma18g00350 274 SMART ring_2 213 253 IPR001841 -
Gma18g00350 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 268 - -
Gma18g00350 274 MobiDBLite consensus disorder prediction 176 205 - -
Gma18g00350 274 PANTHER TARGET OF ERK KINASE MPK-1 1 268 - -
Gma18g00350 274 SUPERFAMILY RING/U-box 208 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00350 Gma-Chr18 2943364 2946541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00350 1 274 C3H Transcription Factor Family AT3G55530 76.812 1.37e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00350 K16283 - gmx:100777936 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00350 18 2943364 2946541 Gma11g02227 11 37603254 37608102 ECH
Gma18g00350 18 2943364 2946541 Gma18g00350 18 2943364 2946541 ECH
Gma18g00350 18 2943364 2946541 Gma11g02227 11 37603254 37608102 GST