Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00348 ATGATGATGTCTTCCGGGACATCCTCGTACTGGTGCTACCGCTGCAGCCGCTTCGTTCGCGTCTGGCCCCACCACACCATCGTCTGTCCCGACTGCGACGGCGGCTTCATCGAAGAAATCGAACACCCGCCCCGCTCCGTCCACCTCGACCCCCGCCGCCGCCAACGCTTCCCCGCCGCCGCCATGTACATGATCGGCCAGCGCCCTTCCTCGGACCACCCCTCCCGCCCCGCTGCCCTCCGCCGCACCCGCCGCAACGGCGGCGACCGCTCCCCCTTCAACCCCGTCATCGTCCTCCGCGGCGGCGCAGCCACCGCGGAGGATGAAAGTCGCGGCTTTGAACTCTTCTACGACGACGGCGCCGGCTCCGGCCTCCGACCCTTACCACCTAGCATGTCAGAGTTTCTCCTCGGATCTGGCTTCGACAGACTCTTGGAACAACTCTCTCAGATTGAGATCAACGGTATTGGACGGTACGAGCACCCTCCTGCTTCAAAAGCAGCCATTGATTCATTACCAACCATCGAAATTGATGACACCCATTTAGCCATGGAGTCACACTGCGCGGTTTGTAAGGAAGCTTTCGAATTAGGAACTGCAGTTAGAGAAATGCCATGCAAGCACATATATCATCCTGAATGCATATTACCGTGGCTCGCACTTCACAACTCTTGCCCCGTTTGTCGCCACGAGTTACCCGCTGATACCCCGAATCCAAATCAAAATCAAAATCCGTCTCAAAATGTTGCCTTGAACGAGGAGGAGAATGTGGGGTTGACGATTTGGAGGTTGCCTGGTGGAGGGTTTGCGGTGGGTAGATTCTCCGGTGGGAGAAGAGGTGCTGAGAGAGAGCTTCCTGTGGTTTACACTGAAATGGATGGTGGGTTTAACAATGGGGGGGGTGAGCCGAGGAGGATTTCTTGGTCCAGAGGGAATAGAGGGAGGGAGAGTGGAGGGTTGACTAGGTTTTTCCGCAATCTGTTTGGTTGCTTCAGAGGAAGTAGTACTCAGCGTTCTGCTTCTAGTAGAGAGTCTATGAGGGCGAGTTCCTCTCGTTCTAGTACTATGGATCCTTCGTTGCGGTCTCGGAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCGTGGATGTTGGATGGGGAAACCGTTGTGTTAGCAATAGGGGATTGGGGCAGGGAGTGGCATCAACAATGGGAGAAAGTGAAACCAATGGGGAGGAATGAGGTTGAAGGAGGGACTCGGGCCGTGATTGTGAAGTATTATCTTTGGAATTTTTGGGGGGAGGGGGGACATGATGTGATGATGATCATGAACTTCATTTTACTTTGA 1332 0.548 MMMSSGTSSYWCYRCSRFVRVWPHHTIVCPDCDGGFIEEIEHPPRSVHLDPRRRQRFPAAAMYMIGQRPSSDHPSRPAALRRTRRNGGDRSPFNPVIVLRGGAATAEDESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDDTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADTPNPNQNQNPSQNVALNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGGEPRRISWSRGNRGRESGGLTRFFRNLFGCFRGSSTQRSASSRESMRASSSRSSTMDPSLRSRRTWSMDVNSGMRAWMLDGETVVLAIGDWGREWHQQWEKVKPMGRNEVEGGTRAVIVKYYLWNFWGEGGHDVMMIMNFILL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00348 443 Pfam zinc-ribbon 9 40 IPR039525 GO:0061630
Gma18g00348 443 MobiDBLite consensus disorder prediction 67 92 - -
Gma18g00348 443 SUPERFAMILY RING/U-box 168 240 - -
Gma18g00348 443 Pfam Protein of unknown function (DUF1117) 257 355 IPR010543 -
Gma18g00348 443 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Gma18g00348 443 SMART ring_2 188 228 IPR001841 -
Gma18g00348 443 MobiDBLite consensus disorder prediction 334 362 - -
Gma18g00348 443 CDD RING-H2_RNF126_like 188 229 - -
Gma18g00348 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 4 331 - -
Gma18g00348 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Gma18g00348 443 Pfam Ring finger domain 187 229 IPR001841 -
Gma18g00348 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00348 Gma-Chr18 2931111 2932612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00348 127 238 C3H Transcription Factor Family AT5G01980 41.071 1.11e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00348 - K11982 gmx:100807324 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00348 18 2931111 2932612 Gma11g02228 11 37612954 37614726 ECH
Gma18g01687 18 47332210 47333637 Gma18g00348 18 2931111 2932612 ECH
Gma07g01252 07 16295225 16296148 Gma18g00348 18 2931111 2932612 ECH
Gma18g00348 18 2931111 2932612 Gma18g00348 18 2931111 2932612 ECH
Gma18g00348 18 2931111 2932612 Gma11g02229 11 37623929 37625900 GST