Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00330 ATGGCTGGAATTTGCTGTGGTGTTGTTGGAGAAGGTGACACTCCGGCTCCACTCGAGCCCACTCCTCGCCCCTCCAGGCGCCGGAGTTTGGACATCTTACCTTTAAAATATATCGCCGACATGCCCATGCCGCCGCCGGAGGCTTTACGGAAGCGTCCCAAGCTCAACCTCAGGGACTGCGATAACGCAATTGAAAATTGCGACGAATCCACTGGACACAAGGTGACGAAGAAGGAATCCAAAGTAGACTACGACGACGACGTCGTTTCGGAAACTAAGAACGTAACTGTTTCGGAAGTTGAAGAAGAATCTCCCAAGTTCGGCGTGACGTCCGTTTGCGGCAGGAGAAGAGACATGGAAGATTCCGTCTCGGTGCGGCCTTGCTTCACCCAAGGCTTCCACTACTTCGGCGTCTTCGACGGTCACGGTTGCTCTCATGTTGCGACTATGTGTAAGGAGCGGCTACACGAGATCGTGAATGAAGAAATTGAAAGCGCGCGCGAGAATTTGGAGTGGAAACTGACGATGGAGAACGGATTCGCTCGCATGGACGACGAGGTTCATCGCCGGAGCCAGAGCAACCAGACCTTCACCTGCAGGTGTGAGCTCCAGACTCCTCACTGCGACGCCGTCGGATCCACCGCCGTCGTCGCCGTCGTCACGCCGGACAAAATCGTCGTCTCTAACTGCGGCGACTCCCGCGCCGTCCTCTGCCGCAACGGCGTCGCCATCCCTCTCTCCTCCGATCACAAGCCGGATCGACCCGACGAATTACTCCGAGTCCAATCCAAGGGAGGGCGCGTGATTTACTGGGACGGTCCGAGAGTGCTTGGTGTGTTAGCAATGTCTCGAGCCATAGGTGACAATTATCTGAAGCCGTACGTGATTTCAGAACCGGAGGTGATGGTGACGGAGCGGACGGAGGAGGACGAGTGTTTGATACTGGCGAGTGATGGGTTGTGGGATGTGGTATCGAATGAGACCGCATGTGGGGTGGTGAGGATGTGCCTCAAGGCGCAGAAGCCGCCGGGGTCTCCGGGGAGTGACGTGGCGGCTGACGGTTCCGACCGTGCTTGCTCCGATGCGTCGATTCTGTTGACCAAGTTGGCGCTGGCAAGGCATAGTTCGGATAATGTGAGCGTGGTGGTGGTTGATTTGAGGAGGGATCAACGACAATCATCAAACTACAACGACGTTAATTAA 1203 0.5603 MAGICCGVVGEGDTPAPLEPTPRPSRRRSLDILPLKYIADMPMPPPEALRKRPKLNLRDCDNAIENCDESTGHKVTKKESKVDYDDDVVSETKNVTVSEVEEESPKFGVTSVCGRRRDMEDSVSVRPCFTQGFHYFGVFDGHGCSHVATMCKERLHEIVNEEIESARENLEWKLTMENGFARMDDEVHRRSQSNQTFTCRCELQTPHCDAVGSTAVVAVVTPDKIVVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRVQSKGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVMVTERTEEDECLILASDGLWDVVSNETACGVVRMCLKAQKPPGSPGSDVAADGSDRACSDASILLTKLALARHSSDNVSVVVVDLRRDQRQSSNYNDVN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00330 400 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169
Gma18g00330 400 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 40 391 - -
Gma18g00330 400 SMART PP2C_4 94 384 IPR001932 -
Gma18g00330 400 Pfam Protein phosphatase 2C 107 378 IPR001932 -
Gma18g00330 400 PANTHER ALPHABET, ISOFORM E-RELATED 40 391 - -
Gma18g00330 400 SUPERFAMILY PP2C-like 104 387 IPR036457 -
Gma18g00330 400 SMART PP2C_SIG_2 120 386 IPR001932 -
Gma18g00330 400 Gene3D - 101 395 IPR036457 -
Gma18g00330 400 ProSiteProfiles PPM-type phosphatase domain profile. 106 386 IPR001932 -
Gma18g00330 400 CDD PP2Cc 106 342 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00330 Gma-Chr18 2757841 2760096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00330 1 361 PP2C-type Phosphatase Gene Family AT3G11410 58.245 9.42e-143 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00330 K14497 - gmx:100796161 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00330 18 2757841 2760096 Gma11g02250 11 37825143 37827221 ECH
Gma18g00330 18 2757841 2760096 Gma18g00330 18 2757841 2760096 ECH
Gma18g00330 18 2757841 2760096 Gma11g02250 11 37825143 37827221 GST
Gma18g00330 18 2757841 2760096 Gma14g00570 14 5455399 5457703 PCT
Gma18g00330 18 2757841 2760096 Gma02g02364 02 49716591 49718694 PCT
Gma14g00570 14 5455399 5457703 Gma18g00330 18 2757841 2760096 PCT
Gma02g02364 02 49716591 49718694 Gma18g00330 18 2757841 2760096 PCT