Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00253 ATGGCCTTCAGAGGAACTGGAACGCTGATTTTGGTGAGTCTCTTATGGCTTTTCTTCCTCTGCGCCACCATTGCTTTCTTTCAGCTCCACTTGGTAGACAACCGAACCAGCAACCCTTCCTCTCGCAGTAACTTCATTGCAACTCAACATGATCGCTCAGATACCCCTTTGGAACAGGATTTGGAGGGTGTCACTCACAAGGTGTATTTTGATATTCAGATCCATGGCAAAGTAGCAGTTGGGATCAATCTTGATATGTATAATTCTCTTGGTAGTAAAAACTACAAATTTGAACAGCATCACATTTCAGGAGAGAAAGGAGTGGGAAGAAGTGGGAAGTCTCTTCATTATAAAGGGAGCACATTCCATAGGATTATGCCGAGCTTTATGGTCCAGGGGGGTGATTTCACCCGTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCCGATGAAAACTTTAAGCTGAAGCATACTGGGCCAGGATACTTATCCATGGCAAATTCTGGGGAAGACACCAACGGCTCCCAGTTCTTCATAACAACAGTTAAAACCAGCTGGCTGGATGGACACCATGTCGTATTCGGCAAGGTACTTTCCGGTATGGACGTTTTGTACAAGATTGAAGCAGAAGGAAGTGAAAATGGCTCGCCAAAAAACAAGGTTGTCATATTAGACAGCGGAGAATTAACTTCATGA 708 0.4421 MAFRGTGTLILVSLLWLFFLCATIAFFQLHLVDNRTSNPSSRSNFIATQHDRSDTPLEQDLEGVTHKVYFDIQIHGKVAVGINLDMYNSLGSKNYKFEQHHISGEKGVGRSGKSLHYKGSTFHRIMPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGEDTNGSQFFITTVKTSWLDGHHVVFGKVLSGMDVLYKIEAEGSENGSPKNKVVILDSGELTS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00253 235 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 69 232 IPR002130 GO:0000413|GO:0003755
Gma18g00253 235 SUPERFAMILY Cyclophilin-like 64 233 IPR029000 -
Gma18g00253 235 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 117 134 IPR020892 GO:0003755|GO:0006457
Gma18g00253 235 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 116 229 IPR002130 GO:0000413|GO:0003755
Gma18g00253 235 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 41 233 - -
Gma18g00253 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 165 180 IPR002130 GO:0000413|GO:0003755
Gma18g00253 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Gma18g00253 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 193 208 IPR002130 GO:0000413|GO:0003755
Gma18g00253 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 192 IPR002130 GO:0000413|GO:0003755
Gma18g00253 235 Gene3D - 56 235 IPR029000 -
Gma18g00253 235 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 41 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00253 Gma-Chr18 2090159 2092908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00253 116 230 U-box Gene Family AT5G67530 46.154 5.99e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00253 K01802 - gmx:100792649 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00253 18 2090159 2092908 Gma11g02319 11 38592831 38596185 ECH
Gma18g00253 18 2090159 2092908 Gma18g00253 18 2090159 2092908 ECH
Gma18g00253 18 2090159 2092908 Gma11g02319 11 38592831 38596185 GST