Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00249 ATGGATTCTGAAATCGTTGAGAGCACTGACATGGCCGATATCACTGCTGATGCAAGGAGTTTTAGTTGGACAGTTGACAGTGCGATAAAGAGTGAGACTGCGTCAATTTCGGGAGAATCCCCAATCCGTAGTTATTCTTCCGTAGTGAACAATGCCATAAGGAGTAGGACTGCATCAGATTTGGGAACAtctccttcccctgtccatagtcttgcttccgcagtggccaatgcaatgagcagcagtagtgctgcaccattttcacaactggaaacgtctccttctcctgtccatagtcttgcttcggcagtgcccagtgcaatgagcaggagtaaagctgcaccattttcacaactggaaGTGGTGCCGAACGCCACTAGACATGTTCCTGCACGATTATTCACCTGGGCTGAGCTTAAAGCAGCCACCAACAATTTTTCACCTCACAACCTGATTCGTGATTTTGGAACCTTTGGCGTTGGGTACAGAGGCAAACTCGTTGATGGTCGTGAGGTCGCAATCGTTAAGGGAACCCAGTTTGGTAAGTCTGAATTTGCCATCTTTTCCCGTTTAGACCATAGGAACTTGGTTGGGCTTGTTGGGTACTGTGAAAACAGAGATGAAAGGCTGTCAGTGTATGAGTATATGAAGAATGGGTCGTTGCATGATTGCTTGCAAGATAAGAACAATGTGGACAAGGATAGCAGTGTGTTGAATTCGTGGAAAATGAGGATCAAGATTGCTTGCGATGCTTCCTTGGGAATACAATATCTGCATAATTATGCAAATCCATCTATTATTCACAGAGATATCAAGTCTTCCAATATTCTTCTTGATGCCAGTTGGACGGCTAGAGTATTTGATTTTGGATTGTCGTTCATATGTCCAGAACCTGACGATGAATACGATGATGAGAGAATAGTGGGAACCTACGCATACATGTGCCCTGAGTACAGGAATGGAGTGCCTCGTATTTTGGCTGGAGATTTGGTCGAAATGTTGGATTCAAGGGTTGGACCACCCGATTTGAAAGAAGCAGAGGCACTGAAGATCCTGGCCTATACTGCTATATGTTGTGTGAAACGGAAAAGGAGGCATAGACCAACCATGAATGACATTGTGGTCAATTTGGATCGGGCTTTTGCTATTTGTGGTAGTAGCCTATATGCCGTTGTCACCCAAGTTCACTTGGATGGATTTTCTGTATGTATGTAA 1215 0.377 MDSEIVESTDMADITADARSFSWTVDSAIKSETASISGESPIRSYSSVVNNAIRSRTASDLGTSPSPVHSLASAVANAMSSSSAAPFSQLETSPSPVHSLASAVPSAMSRSKAAPFSQLEVVPNATRHVPARLFTWAELKAATNNFSPHNLIRDFGTFGVGYRGKLVDGREVAIVKGTQFGKSEFAIFSRLDHRNLVGLVGYCENRDERLSVYEYMKNGSLHDCLQDKNNVDKDSSVLNSWKMRIKIACDASLGIQYLHNYANPSIIHRDIKSSNILLDASWTARVFDFGLSFICPEPDDEYDDERIVGTYAYMCPEYRNGVPRILAGDLVEMLDSRVGPPDLKEAEALKILAYTAICCVKRKRRHRPTMNDIVVNLDRAFAICGSSLYAVVTQVHLDGFSVCM 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00249 404 ProSiteProfiles Protein kinase domain profile. 147 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00249 404 SUPERFAMILY Protein kinase-like (PK-like) 123 375 IPR011009 -
Gma18g00249 404 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 124 319 IPR044815 GO:0004674
Gma18g00249 404 Gene3D Phosphorylase Kinase; domain 1 107 215 - -
Gma18g00249 404 Gene3D Transferase(Phosphotransferase) domain 1 216 385 - -
Gma18g00249 404 SMART serkin_6 146 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00249 404 Pfam Protein kinase domain 182 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00249 404 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 1 124 IPR044815 GO:0004674
Gma18g00249 404 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 322 389 IPR044815 GO:0004674
Gma18g00249 404 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 1 124 - -
Gma18g00249 404 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 322 389 - -
Gma18g00249 404 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 124 319 - -
Gma18g00249 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00249 Gma-Chr18 2051864 2053582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00249 131 387 Receptor kinase-like Gene Family AT3G55950 47.664 4.59e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gma18g00249 Pkinase 2.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00249 - - gsj:114396534 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00249 18 2051864 2053582 Gma11g02326 11 38642860 38644360 GST