Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00248 atgagtagtactagtggaagtttgggagcattacctgtgcatggtttttcttcggctgtggacaatgcTATAAGAAGTAGAAGTAGAGCAGATTTGGGAAGATCCAGTTCCCCCGTGCATGGTTTTGCTATGGAAGATGTTTGTGGTTCATTCAGACTGGCAGAGCTTGTAGCAGCAACCAACAATTTCTCGCGTGACAACATGATTAGCCATGGCAGGATTGGCTTTGTGTACAAAGGCAAACTCTTTGATGGTCGTGAGGTGGCTATCAAGAGGGTTGGAACCAGTACTTCAAACATTAAGGAGTTTCAAAGCATTACACTTGGGCCTTTATTCTTGACCAATTGTCTACACCACAAGCACTTGGTTCGGCTTCTAGGGTTGTGTGAAGAGAAAAGTGAAAGGCTCTTGGTGTATCAGTACATGAAGAATAGAGCGTTGTATGATCATTTGCATGACAAGAACAATGTGGAGAAGGGTAGCACTATGTTGAATTCGTGGAAAATGAGGATCAAAATTTCTTTGGACGCTTCCCGTGGAATAGAATATATACATAATCATTTATATTCTATTCACGGAAATATCAAGTCCTCCAACATTCTTCTTGATACGACCTGGACGGCAAAAGTATCTGATTTTGGGAAGGTATCAGCAGGAACTCCACATGTatggacagaaaagagtgatgtgtatgggtttggagttgtactgctagagcttttaacgggaaagaaacctatactcaagaatgaggaagATGGAAGCACCCGATTACATGTGATAGACTCTGCAGAGCCTGCTATTTTGGCTGGAGAACTGGTGAAAATTAAGGACCCAAGGGTTGGACCACCCGGTGTGAATGAAGCAAAGGCACTGGAGTTAGTGGCCGATACAGCTATCCATTGTGTGAAAAGGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGCTCAATTTGGAGAGGGCTTTGGCCACTTGTGGTAGTGACCATCGTAGCCCTGAGAAAAGAATGGCTCTTTAA 1023 0.3695 MSSTSGSLGALPVHGFSSAVDNAIRSRSRADLGRSSSPVHGFAMEDVCGSFRLAELVAATNNFSRDNMISHGRIGFVYKGKLFDGREVAIKRVGTSTSNIKEFQSITLGPLFLTNCLHHKHLVRLLGLCEEKSERLLVYQYMKNRALYDHLHDKNNVEKGSTMLNSWKMRIKISLDASRGIEYIHNHLYSIHGNIKSSNILLDTTWTAKVSDFGKVSAGTPHVWTEKSDVYGFGVVLLELLTGKKPILKNEEDGSTRLHVIDSAEPAILAGELVKIKDPRVGPPGVNEAKALELVADTAIHCVKREGKDRPTMADIVLNLERALATCGSDHRSPEKRMAL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00248 340 PIRSF ILK 53 220 - -
Gma18g00248 340 PIRSF ILK 220 337 - -
Gma18g00248 340 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 5 331 - -
Gma18g00248 340 Gene3D Transferase(Phosphotransferase) domain 1 142 219 - -
Gma18g00248 340 Pfam Protein tyrosine and serine/threonine kinase 66 214 IPR001245 GO:0004672|GO:0006468
Gma18g00248 340 ProSiteProfiles Protein kinase domain profile. 63 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00248 340 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 5 331 IPR044815 GO:0004674
Gma18g00248 340 Gene3D Transferase(Phosphotransferase) domain 1 220 334 - -
Gma18g00248 340 SUPERFAMILY Protein kinase-like (PK-like) 43 320 IPR011009 -
Gma18g00248 340 Gene3D Phosphorylase Kinase; domain 1 25 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00248 Gma-Chr18 2049389 2050411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00248 51 333 Receptor kinase-like Gene Family AT3G55950 55.280 4.59e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gma18g00248 PK_Tyr_Ser-Thr 2.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00248 - - gmx:100787192 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00248 18 2049389 2050411 Gma11g02328 11 38658855 38659985 ECH
Gma18g00248 18 2049389 2050411 Gma18g00248 18 2049389 2050411 ECH
Gma18g00248 18 2049389 2050411 Gma11g02328 11 38658855 38659985 GST
Gma18g00248 18 2049389 2050411 Gma14g00502 14 4795641 4798031 PCT
Gma18g00248 18 2049389 2050411 Gma02g02425 02 50337466 50340131 PCT
Gma14g00502 14 4795641 4798031 Gma18g00248 18 2049389 2050411 PCT
Gma02g02425 02 50337466 50340131 Gma18g00248 18 2049389 2050411 PCT