Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00247 ATGAAAACACCACCTTCCTCCTCCGTCAACCTCTGTCTCGCCGTCGCCGTCGCCGCAGTACTCATACTCTCTCTGGTACCCTCATCCCATGGTTTTGGCTCCGGCGCCACCCTGGCCCTCTCCGACGCCTCTTCCACCGTGTGCGCCGTCGTAGCATCCGAGTCCACGCGCCGCATTGAGTGTTACCGTCAGGGGCAGGTAGTTCCCATCGCTCCCAACGTTAGTTTTTCGTCAATTTCCGGTGGGAGGAACTACTTCTGCGGCATAAGGTCCAGCAACTCGAATCTGCTTTGCTGGAACACAAGCTCTTCCTTCGAGAGGAGAAGGCTTTACAACGACAGTTCTGTTCCATTGGAGAATCTCGCCGTCGGGGACACCCACGTTTGCGCCACCGCGGTGGGTGATGGCACGGTGCGGTGCTGGAGAACCGGTAACACGTTTCAAATTGTATCTGGGTCTGATCAATTCGCTTCAATTTCATCTGGGTCTGGCTTCTCTTGCGGAATTTTGAAGAATGGTTCTCGGGTTCGGTGCTGGGGAGACACTAATGTTTCGGAACAGATTGAGAATTCGTTTCGGAACATTTCCATGTTGAGTCTTGTCGCAGGTGGTTCGCATGTTTGTGGGTTGAACTTAACTGGGTTTTTGGTGTGCAGAGGAAGTAACGGTTCTGGACAATTTGATATTCCTCAAGGTGGGGCTTTTGAGTATTCTGGGTTGGCACTTGGTGCTGAGCATGGTTGTGCGATTAGAGAGTCGAATGGTTCGGTTGTGTGTTGGGGTGGAAATGGGCAATTCTCGGTGAGTAATGTTACAGAAGGAGTTTCCTTTGAGGTAATTGTTTCTGGTTCTAACTTTGTTTGTGGATTGACAACAAACAATTTGACAGTGGTGTGTTGGGGTCCTGGTTGGTCTAATGGTTCAAGGTTTGAGCTTCCTTTGCCTCGTGTTCTTCCAGGGCCTTGTGTTCAATCTTCTTGTGGAGAGTGTGGTTCGTATCTTAATTCTGAATTTCTATGCTCTGGCTCTGGTAACATTTGTAAGCCAATGACATGTAGGCCTCAAACAACGGTTCCACCGCCCCTACTGCCATCACCGCCACCACCGTCTCCGtctccaccgccaccgccatcactaacctcgccatctccatctcgatcgaagaccttgacaagggggttattggcttttgctattattggttcagtgggagcttttgctggaatatgcacaatagtttattgcctgtggagtggagtttgttttgggaagaagaaagtccacaattctgtgcagcctacaatcacaagaggtaGCAGTGGTTCAAATGGTGGGGGTGCTTCCAATAATAGCAATTCTTCGATATCATCTATGATTATGCGTCAGACTTCAATAATAATGAGGCGGCAGAGGAGTGGAACCTCATCAACGAAGCATCCAGACAGGGCTGAGGAGTTCACTCTAGCTGAGCTTGCGGCAGCCACCGACAATTTCTCACATGAAAACAAGATTGGTGCTGGAAGCTTTGGTGTTGTGTACAAAGGAAAACTCACGGATGGTCGCGAGGTGGCAATCAAGAGGGGTGAAACCGGGTCCAAGATGAAGAAGTTTCAAGAGAAAGAGAGTGCATTTGAGTCTGAATTGGCCTTCTTGTCGCGTCTGCACCATAAGCACTTGGTTGGGCTGGTTGGGTTCTGTGAAGAGAAAGATGAGAggctcttggtgtatgagtacatgaagaatggggctttgtatgatcatttgcatgacaagaacaatgtggagaaggaaagcagaaagagagctatattcAAGTATGGAGAAGATGGAGGCACCCCATTGAGTGTGGTGGACTTTGCAGTGCCTCCTATTTTGGCCGGAGAATTAGTGAAAATTTTGGATCCAAGGGTTGAACCACCCAACGTGATTGAGTCCGAGGCAGTGGAATTAGTCGCCTACACAGCCATTCATTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGTCCAATTTGGAGAGGGCTTTGGCTATTTGTGAGAGTAGCCATGACAGCATTTCCAGCGGTACTATCTCTGTTGTTTCAGAATGA 2103 0.4237 MKTPPSSSVNLCLAVAVAAVLILSLVPSSHGFGSGATLALSDASSTVCAVVASESTRRIECYRQGQVVPIAPNVSFSSISGGRNYFCGIRSSNSNLLCWNTSSSFERRRLYNDSSVPLENLAVGDTHVCATAVGDGTVRCWRTGNTFQIVSGSDQFASISSGSGFSCGILKNGSRVRCWGDTNVSEQIENSFRNISMLSLVAGGSHVCGLNLTGFLVCRGSNGSGQFDIPQGGAFEYSGLALGAEHGCAIRESNGSVVCWGGNGQFSVSNVTEGVSFEVIVSGSNFVCGLTTNNLTVVCWGPGWSNGSRFELPLPRVLPGPCVQSSCGECGSYLNSEFLCSGSGNICKPMTCRPQTTVPPPLLPSPPPPSPSPPPPPSLTSPSPSRSKTLTRGLLAFAIIGSVGAFAGICTIVYCLWSGVCFGKKKVHNSVQPTITRGSSGSNGGGASNNSNSSISSMIMRQTSIIMRRQRSGTSSTKHPDRAEEFTLAELAAATDNFSHENKIGAGSFGVVYKGKLTDGREVAIKRGETGSKMKKFQEKESAFESELAFLSRLHHKHLVGLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVEKESRKRAIFKYGEDGGTPLSVVDFAVPPILAGELVKILDPRVEPPNVIESEAVELVAYTAIHCVNLEGKDRPTMADIVSNLERALAICESSHDSISSGTISVVSE 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00247 700 Pfam Protein kinase domain 499 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00247 700 Gene3D Phosphorylase Kinase; domain 1 458 578 - -
Gma18g00247 700 SUPERFAMILY Protein kinase-like (PK-like) 475 599 IPR011009 -
Gma18g00247 700 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 7 599 IPR044815 GO:0004674
Gma18g00247 700 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 7 599 - -
Gma18g00247 700 Pfam Regulator of chromosome condensation (RCC1) repeat 157 181 - -
Gma18g00247 700 SUPERFAMILY RCC1/BLIP-II 33 266 IPR009091 -
Gma18g00247 700 Gene3D - 28 192 IPR009091 -
Gma18g00247 700 Gene3D - 193 364 IPR009091 -
Gma18g00247 700 MobiDBLite consensus disorder prediction 434 454 - -
Gma18g00247 700 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 600 697 - -
Gma18g00247 700 MobiDBLite consensus disorder prediction 358 382 - -
Gma18g00247 700 MobiDBLite consensus disorder prediction 358 387 - -
Gma18g00247 700 ProSitePatterns Protein kinases ATP-binding region signature. 504 526 IPR017441 GO:0005524
Gma18g00247 700 ProSiteProfiles Protein kinase domain profile. 498 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma18g00247 700 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 600 697 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00247 Gma-Chr18 2043429 2045852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00247 600 700 Receptor kinase-like Gene Family AT3G55950 59.434 1.67e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gma18g00247 Pkinase 1.7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00247 - - gmx:100786639 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00247 18 2043429 2045852 Gma11g02330 11 38666843 38669294 GST