Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma18g00243 | ATGGCCGATTCCAAGGAGAAGAATCGCAAATTTGTGGAGACCATCGAACTCCAAATCGGATTGAAAAACTACGATCCACAGAAGGACAAGCGTTTCAGTGGCTCTGTCAAGCTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAGCATGTTGAAGAGGCGGAGAAGATAGGACTGGACTGGATGGATGTGGAAGCCCTGAAGAAGCTAAACAAAAATAAGAAGTTGGTGAAGAAACTAGCTAAAAAGTACCATGCCTTTTTAGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCATGTATTGCCTTTTTTTCGGAAAGTTCCCTACACTTGTTACTCACCAGGAAACTCTTGAGTCAAAGGTTAACGAGTCTAAGGCTATGGTTAAATTTCAACTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTGGGGAATGTTAGTATGGAGGAAAAGCAAATCTTCCAAAATGTTCAACTGAGTGTTAATTTCCTCGTCTCTTTGTTGAAAAAGAACTGGCAAAATGTCAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATCTTACCGTGTCTTTTGA | 624 | 0.4327 | MADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGMYCLFFGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma18g00243 | 207 | CDD | Ribosomal_L1 | 5 | 206 | IPR028364 | - | |
| Gma18g00243 | 207 | Gene3D | - | 5 | 202 | - | - | |
| Gma18g00243 | 207 | PANTHER | 60S RIBOSOMAL PROTEIN L10A-3 | 1 | 205 | - | - | |
| Gma18g00243 | 207 | SUPERFAMILY | Ribosomal protein L1 | 6 | 207 | IPR023674 | - | |
| Gma18g00243 | 207 | Pfam | Ribosomal protein L1p/L10e family | 6 | 201 | IPR028364 | - | |
| Gma18g00243 | 207 | Gene3D | - | 49 | 145 | IPR016095 | - | |
| Gma18g00243 | 207 | PANTHER | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER | 1 | 205 | - | - | |
| Gma18g00243 | 207 | PIRSF | RPL1p_RPL1a_RPL10e_RPL1o | 2 | 207 | IPR002143 | GO:0003723|GO:0003735|GO:0006412|GO:0015934 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma18g00243 | Gma-Chr18 | 1973965 | 1975762 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma18g00243 | 4 | 207 | Cytoplasmic Ribosomal Protein Gene Family | AT1G08360 | 87.255 | 9.27e-116 | 327 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma18g00243 | K02865 | - | gmx:100808580 | 370.548 |