Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00240 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACTATGGAAAATTACTATGATTCTGGCTGGCACATGGGCAACAGCAGCTGGGCTCAATGCAGTGATCATTCTTCTTCTTCCTTTGCAGTGCCTATACAAATACTCCCTCATCATGTCACTGACTCTGCCTCTCTTCAGTTTGGTGAGTTTCATTCATGGCCACTTCCCATTGAAGGGGCTGCAGAAGAAAGAGCAATAAGTGCTTCCAAGAGTCACAGCCAAGCAGAGAAAAGGCGCAGAGACAGGATCAACGCACAGCTTGCAACTCTCAGAAAACTTATTCCCAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCAAGTGAAAGATCTAAAGCGAAAAGCCATGGATGTTAGCAGAGCCTTCACAGTTCCAACAGAAATTGATGAAGTATCAATTGACTATGACCATGTTCAAGACGAAAGCTGCACTAAAGTGAACAAACTGAAGGACAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAACTCATCCAAGTCCTCAAAGGCTTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTGCTTTGTTCTAAGGATAGAGAAGACAGTGTTTGCCTTGCCACTCTCAAACAGTCCCTCAAATCTGCTGTCACCAAAATTGCTTCATCATCCATGGCTTCTAGTTGTCCCGCTAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCACTGCCTACAGTAA 828 0.4396 MGDKRLRNHGRNFRMVSIVTMENYYDSGWHMGNSSWAQCSDHSSSSFAVPIQILPHHVTDSASLQFGEFHSWPLPIEGAAEERAISASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRAFTVPTEIDEVSIDYDHVQDESCTKVNKLKDNIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDREDSVCLATLKQSLKSAVTKIASSSMASSCPARSKRQRFFLPSHCLQ 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00240 275 Pfam Helix-loop-helix DNA-binding domain 89 135 IPR011598 GO:0046983
Gma18g00240 275 PANTHER TRANSCRIPTION FACTOR BHLH30 55 273 IPR045847 GO:0003700|GO:0006355
Gma18g00240 275 PANTHER TRANSCRIPTION FACTOR BHLH51 55 273 - -
Gma18g00240 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 135 IPR011598 GO:0046983
Gma18g00240 275 Gene3D - 80 144 IPR036638 GO:0046983
Gma18g00240 275 CDD ACT_UUR-ACR-like 182 217 - -
Gma18g00240 275 SMART finulus 92 141 IPR011598 GO:0046983
Gma18g00240 275 CDD bHLH_AtAIG1_like 81 160 - -
Gma18g00240 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 138 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00240 Gma-Chr18 1948226 1949532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00240 21 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.966 2.07e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma18g00240 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00240 - - gmx:100799687 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00240 18 1948226 1949532 Gma18g00240 18 1948226 1949532 ECH
Gma18g00240 18 1948226 1949532 Gma11g02335 11 38773231 38774901 GST
Gma18g00240 18 1948226 1949532 Gma14g00493 14 4652794 4654377 PCT
Gma18g00240 18 1948226 1949532 Gma02g02434 02 50471393 50473066 PCT
Gma14g00493 14 4652794 4654377 Gma18g00240 18 1948226 1949532 PCT
Gma02g02434 02 50471393 50473066 Gma18g00240 18 1948226 1949532 PCT