Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00239 ATGGTGAAGAGATGGTTTTCCATCCGAAGAGGCGATCGAAATCCCTTCTGCCACTCGTGTCATTTCTCACTTCACAAATTGCCAGTGCCTACTAATAGCAACTGCAACCAAACAGTGTCTCATGATACTGTTTGTTCTGATGCCCCACCGTCGAAGCCCTCCTCCGCCACTCGCCGCCATCGTAGCTCTCCCTTCTCACACCGTGGAATCAAATCACGATGTCGAGCCCAGATTCTCGATCATTCAGTTGGCACTACACGGAACTCGATGACAGAGACCTCGAGATCCGAGGGACGCCTCCCCACCACCGCGTTCACCGCCGCAGCCGCCCACGCGCCGCCGCTGGCGCAGCCTCAGGGAATGGACCCAGCTTCCATCAAGAAATTGCCCATAATCCTCCACCACGCGCCGTCGGATCGCGAGGAAAGCGCGTGGGACGAAACGGAGTGCTGCATCTGCCTCGGCGAGTTCAGAGACGGCGAGAAAGTGAAGGTTTTGCCGGCGTGTGACCACTATTTCCACTGTGATTGTGTTGACAAGTGGCTCACTCATCACTCTAGTTGCCCTCTTTGCAGAGCTTCTCTCAAGCAAGTTTCTCGATCGACTCATCATGACTTCAAGTCTCTGGGTGTTCATACACTAGATGTGTTTGGGTTGTTGTGGAGAATATTTTTAGACAGTAGCACATGGCAAAGGAGGGAGAGAATGTGGAGTATGTCCGTGATAGTGTTAAATTATGATATGTTCCCACGTTGGATGATAGACGACCTGGGGTTCGGAAAGGTCATATAA 792 0.5227 MVKRWFSIRRGDRNPFCHSCHFSLHKLPVPTNSNCNQTVSHDTVCSDAPPSKPSSATRRHRSSPFSHRGIKSRCRAQILDHSVGTTRNSMTETSRSEGRLPTTAFTAAAAHAPPLAQPQGMDPASIKKLPIILHHAPSDREESAWDETECCICLGEFRDGEKVKVLPACDHYFHCDCVDKWLTHHSSCPLCRASLKQVSRSTHHDFKSLGVHTLDVFGLLWRIFLDSSTWQRRERMWSMSVIVLNYDMFPRWMIDDLGFGKVI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00239 263 SMART ring_2 150 191 IPR001841 -
Gma18g00239 263 PANTHER RING-H2 FINGER PROTEIN ATL66 106 201 - -
Gma18g00239 263 MobiDBLite consensus disorder prediction 42 69 - -
Gma18g00239 263 Pfam Ring finger domain 149 192 IPR001841 -
Gma18g00239 263 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Gma18g00239 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 198 IPR013083 -
Gma18g00239 263 MobiDBLite consensus disorder prediction 42 60 - -
Gma18g00239 263 CDD RING-H2_PA-TM-RING 149 192 - -
Gma18g00239 263 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 106 201 IPR044675 -
Gma18g00239 263 SUPERFAMILY RING/U-box 141 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00239 Gma-Chr18 1937606 1939272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00239 108 195 C3H Transcription Factor Family AT3G10910 45.455 2.81e-20 84.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00239 18 1937606 1939272 Gma11g02336 11 38784169 38785681 GST
Gma18g00239 18 1937606 1939272 Gma14g00490 14 4636244 4637050 PCT
Gma14g00490 14 4636244 4637050 Gma18g00239 18 1937606 1939272 PCT