Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00238 ATGAAGGGTTATGAGCCCCGTTCAAGCTCTTCATGTGCAGCTTGCAAGCTATTGAAGAGAAGATGCATACCAAATTGTATTTTTGCACCTTACTTTAGGTCTGATGAGTGCAAGAAGTTTGCAAAGGTGCACAAGGTGTTTGGAGCCAGCAATGTGAGCAAGATTCTGATTGAAGTGCCAGAAGAGCAGAGAGAGGACACGGTGAATTCTCTGGCTTATGAGGCTGAGGCAAGGCTGAGAGACCCGGTTTATGGATGCATTGGTGCCATAGCTCTGTTGCAAAGGAAGATGGTGGAGCTTCAACATGATCTGGcaattgcaaaggatcgtcttgcgcgttgtcacgctgctgctgctgctgctactactactatcccttctcctGATATCTTGCATGCCAATGTCTCACAGTTTCACCTAATGATAAAGAGTGCCAACATTACTGCAAGAACAGAAGAACGATATGGATATCTTGTACATGCACAATAG 489 0.3804 MKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHAAAAAATTTIPSPDILHANVSQFHLMIKSANITARTEERYGYLVHAQ 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00238 162 Coils Coil 90 110 - -
Gma18g00238 162 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Gma18g00238 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 140 - -
Gma18g00238 162 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Gma18g00238 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00238 Gma-Chr18 1924368 1926528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00238 1 111 AS2 family AT3G11090 81.081 8.29e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma18g00238 LOB 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00238 - K14486 gmx:100791250 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00238 18 1924368 1926528 Gma18g00238 18 1924368 1926528 ECH
Gma18g00238 18 1924368 1926528 Gma11g02337 11 38798322 38800398 GST