Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00228 ATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTGCTGAGACGCAGGTGTACCAAGGACTGCATCTTTGCTCCCTATTTCCCTTCCAATGATCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGCTTCAGGAACTTCCGGCTCACCAGAGAGGGGATGCTGTGAGTAGTTTGGTGTATGAAGCACATGCAAGAGTTCGGGACCCGGTGTATGGTTGTGTTGGAGCCATATCCCATCTGCAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAGGAGCCACTGATGCCAAACCCAGAAATGGAAGACCCAGATCAGAAATCTTACCTTCTCCAAAATGAACTCCCTCAGTACCTCAACTATGCCTCTTCTAGCAACGTAATTTATGATTCTTTCTCAAGAGAGAGCATTTTTGGACATGACATGGTTTCTTGA 498 0.4639 MAGNSPCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPAHQRGDAVSSLVYEAHARVRDPVYGCVGAISHLQNQVSELQMQLAVAQAEILCIQMQQEPLMPNPEMEDPDQKSYLLQNELPQYLNYASSSNVIYDSFSRESIFGHDMVS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00228 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 157 - -
Gma18g00228 165 Coils Coil 85 105 - -
Gma18g00228 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 157 - -
Gma18g00228 165 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Gma18g00228 165 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00228 Gma-Chr18 1838695 1839676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00228 3 132 AS2 family AT2G30130 78.195 1.05e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma18g00228 LOB 4.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00228 - - gmx:100805733 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00228 18 1838695 1839676 Gma11g02349 11 38891191 38891972 ECH
Gma18g00228 18 1838695 1839676 Gma18g00228 18 1838695 1839676 ECH
Gma18g00228 18 1838695 1839676 Gma11g02349 11 38891191 38891972 GST
Gma18g00228 18 1838695 1839676 Gma14g00476 14 4526036 4527047 PCT
Gma14g00476 14 4526036 4527047 Gma18g00228 18 1838695 1839676 PCT