Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00222 ATGCAACGCTCAGTGAGGCACCAAGAGGAAAAGCAATGCAATGGAAAAGATACAAAGGAAAAGGCTAGTAAAGATGATGATTTCCATCTGCTCTCAACTCATGCTCCTACAGATGAACATAACTCTATGGAACATGATAACGTTTGGAAGTTAATTCCCCAATTTAGAGAAAAGTTGCATGACCACCAAAAGAAGGCTTTTGAATTTCTTTGGCAAAATATTGGAGGGTCTATGGAGCCAAAACTTATGGATGCAGAATCCAAAAGAAGAGGGGGTTGTGTGATATCTCATGCTCCTGGAGCTGGTAAAACTTTTCTCATCATTGCATTTCTCGTTAGCTATTTAAAGCTATTCCCAGGGAAGAAGCCTCTTATCCTTGCTCCAAAAGGCACACTTTACACTTGGTGCAAAGAATTCAACAAGTGGGAAATTTCTATGCCAGTGTATCTGATTCATGGGCGTGGTGGAACTCAGAAAGATACTGAGCAAAATTCAATTGTTCTTCCTGGTTTTCCAAATCCAAATAAAGATGTCAAGCATGTTTTGGACTGCTTGCAAAAGATAAAACTGTGGCAAGAGAAACCAAGTGTTTTGGTCATGAGCTATACTGCATTTTTAGCATTAATGAGAGAGGGTTCAGAGTTTTCACACAGAAAATATATGGCTAAAGCATTGAGGGAAGGTCCTGGGATCTTGATACTTGATGAAGGGCACAATCCAAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAACTGAAAACAGATCTAAGAATACTACTTTCCGGTACATTATTTCAGAACAATTTTTGTGAATACTTCAACACACTTTGCTTGGCAAGACCAAAGTTTATCTCCGAAGTGCTTGATACATTAGACCCGATTACCAGAAGGAAAAGCAAAACAGTAGAAAAGGCAGGTCATTTGCTAGAATCACGAGCTAGAAAATTGTTCTTAGATAAAATTGCTAAGAAAATTGACTCGGGTATTGGAAATGAGAGGATGCAGGGTCTAAACATGTTGAGAGAAACCACAAATGGTTTTGTAGATGTTTATGAGAGTGAAAATTTTGATAGTGCTCCTGGTTTACAAATCTACACGTTGCTAATGAATACAACTGACAAGCAGCGTGAGATTTTGCCAAAACTACACACGAGAGTGGACGAGTGCAATGGTTACCCTCTAGAGCTAGAGCTTTTGGTAACTCTTGGATCAATACATCCATGGTTGGTTAAAACAACCTCATGCGCAAATAAGTTTTTCACTGCGGACCAATTGAAGCAGCTAGACAAATACAAGTATGATATGAAAGCAGGATCAAAAGTTAAATTTGTTCTGAGCCTTGTTTTCCGTGTTATGCAGAGAGAGAAAGTACTTATCTTCTGCCACAACCTTGCACCTGTGAAGTTATTGATAGAGTTATTTGAGATGTTCTTCAAATGGAAAAAAGATAGAGAAATTCTGCTGCTTAGTGGGGAACTAGACCTCTTTGAACGCGGGAAAGTGATAGATAAGTTTGAGGAACATGGAGGAGCATCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGTTTAACAGCAGCTTCTAGAGTGATTTTTTTGGACTCAGAATGGAATCCATCGAAAACAAAACAGGCTATTGCACGGGCTTTTCGTCCTGGTCAAGAAAAAATGGTTTACGTTTATCAGCTCTTGGTAACAGGCACATTGGAGGAAGATAAGTACAAAAGAACCACTTGGAAAGAGTGGGTTTCTAGCATGATTTTTAGTGAGGCTTTTGAGCAGAACCCTTCACATTCGCGAGCAGTGAACATTGAAGATGATATACTGAGGGAAATGGTTGAGGAGGACAAGTCTAAAACAATTCATATGATTCTAAAGAATGAAAAGGCTTCAACAAATTGA 1920 0.3922 MQRSVRHQEEKQCNGKDTKEKASKDDDFHLLSTHAPTDEHNSMEHDNVWKLIPQFREKLHDHQKKAFEFLWQNIGGSMEPKLMDAESKRRGGCVISHAPGAGKTFLIIAFLVSYLKLFPGKKPLILAPKGTLYTWCKEFNKWEISMPVYLIHGRGGTQKDTEQNSIVLPGFPNPNKDVKHVLDCLQKIKLWQEKPSVLVMSYTAFLALMREGSEFSHRKYMAKALREGPGILILDEGHNPRSTKSRLRKGLMKLKTDLRILLSGTLFQNNFCEYFNTLCLARPKFISEVLDTLDPITRRKSKTVEKAGHLLESRARKLFLDKIAKKIDSGIGNERMQGLNMLRETTNGFVDVYESENFDSAPGLQIYTLLMNTTDKQREILPKLHTRVDECNGYPLELELLVTLGSIHPWLVKTTSCANKFFTADQLKQLDKYKYDMKAGSKVKFVLSLVFRVMQREKVLIFCHNLAPVKLLIELFEMFFKWKKDREILLLSGELDLFERGKVIDKFEEHGGASKVLLASITACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQEKMVYVYQLLVTGTLEEDKYKRTTWKEWVSSMIFSEAFEQNPSHSRAVNIEDDILREMVEEDKSKTIHMILKNEKASTN 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00222 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 597 IPR027417 -
Gma18g00222 639 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 84 284 IPR014001 -
Gma18g00222 639 Gene3D - 29 326 IPR038718 -
Gma18g00222 639 SMART helicmild6 474 559 IPR001650 -
Gma18g00222 639 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 638 IPR044567 GO:0080188
Gma18g00222 639 MobiDBLite consensus disorder prediction 1 42 - -
Gma18g00222 639 Pfam SNF2-related domain 86 327 IPR000330 GO:0005524|GO:0140658
Gma18g00222 639 Pfam Helicase conserved C-terminal domain 442 558 IPR001650 -
Gma18g00222 639 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 445 614 IPR001650 -
Gma18g00222 639 Gene3D - 366 639 IPR027417 -
Gma18g00222 639 SMART ultradead3 55 299 IPR014001 -
Gma18g00222 639 CDD SF2_C_SNF 434 570 - -
Gma18g00222 639 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 2 638 - -
Gma18g00222 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 301 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00222 Gma-Chr18 1777168 1779087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00222 491 577 RAD5 or RAD16-like Gene Family AT5G22750 43.678 1.71e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma18g00222 SNF2_N 3.4e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00222 K10875 - gmx:100781856 1271.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00222 18 1777168 1779087 Gma18g00222 18 1777168 1779087 ECH
Gma18g00222 18 1777168 1779087 Gma11g02354 11 38951262 38952636 GST
Gma18g00222 18 1777168 1779087 Gma14g00474 14 4474915 4481318 PCT
Gma14g00474 14 4474915 4481318 Gma18g00222 18 1777168 1779087 PCT