Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00192 ATGAATTCAGCATCCCCGCAGTTTGTTTCCTCAAGAAGGATGAGTGTGTACGATCCGATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGAAATTTAAGTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATACTGGGAGAGCCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTGAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAGGGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAGGAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAAATAGACAAATCACAGAACTGAGAAATGCTTTAAATGCTCATATTGGTGACGTAGAGCTCAGGATTTTAGTAGATGGTATGATGAGCCACTATGCCGAAATGTTTCGCATGAAATCTGCTGCTGCAAAAGCAGATGTCTTCTATGTTATGTCCGGCATGTGGAAAACAACAGCTGAAAGATTTTTCCTATGGATTGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGGCCCCCTGATTGAACCCCTGACGGAGCAACAACGTTTGGATATCTATAACCTTGGACAATCATGTCAACAAGCAGAAGATGCCCTTTCACAAGGTATGGACAAACTCCGGCAAACACTTGCTGATAGTGTAGCAGCTGGGCAGTTCATGGAAGGAACATATATTCCACAGATGACTTCTGCAATGGACAAGTTGAAAGCTCTGGTGAGCTTTGTGAACCAGGCTGATCATCTTCGGCAGGAAACTTTGCAGCAAATGTCTCGAATACTTACAATCCGTCAGGCAGCTCGATGCTTGCTTGCTTTGGGGGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTGTGGTCTAATAGACCTCGTGAACCTGCTTAG 1089 0.4426 MNSASPQFVSSRRMSVYDPIHQISMWGEGFKSNGNLSAAMPLIDETDMKFDSQSEDASHGILGEPNKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGIYIGGGLDSNHLGFAGSVNSGITTFEMEYGHWVNEQNRQITELRNALNAHIGDVELRILVDGMMSHYAEMFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIEPLTEQQRLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYIPQMTSAMDKLKALVSFVNQADHLRQETLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00192 362 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
Gma18g00192 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Gma18g00192 362 Coils Coil 97 124 - -
Gma18g00192 362 Coils Coil 158 178 - -
Gma18g00192 362 SMART brlzneu 74 137 IPR004827 GO:0003700|GO:0006355
Gma18g00192 362 Pfam bZIP transcription factor 76 112 IPR004827 GO:0003700|GO:0006355
Gma18g00192 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Gma18g00192 362 CDD bZIP_HBP1b-like 78 130 - -
Gma18g00192 362 MobiDBLite consensus disorder prediction 53 76 - -
Gma18g00192 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Gma18g00192 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Gma18g00192 362 SUPERFAMILY Leucine zipper domain 78 119 IPR046347 GO:0003700|GO:0006355
Gma18g00192 362 PANTHER TRANSCRIPTION FACTOR TGA1 1 361 - -
Gma18g00192 362 Gene3D - 77 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00192 Gma-Chr18 1557890 1563668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00192 1 362 Calmodulin-binding Proteins AT5G10030 70.055 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gma18g00192 DOG1 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00192 K14431 - gmx:100793353 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00192 18 1557890 1563668 Gma11g02383 11 39204045 39209870 GST
Gma05g01802 05 39624472 39631235 Gma18g00192 18 1557890 1563668 PCT
Gma08g01292 08 10961012 10968014 Gma18g00192 18 1557890 1563668 PCT